Publications

Lakshminarayana RV, Sabahat Noor, Satyavathi VV, Srividhya A, Kaliappan A, Parimala SRN, Bharathi PM, Deborah DA, Sudhakar Rao KV, Shobharani N, EA Siddiq EA, Javaregowda Nagaraju (2015) Discovery and mapping of genomic regions governing economically important traits of Basmati rice. BMC Plant Biology doi:10.1186/s12870-015-0575-5

Lakshminarayana RV, Satyavathi VV, EA Siddiq and Nagaraju J (2014) Review of methods for the detection and quantification of adulteration of rice: Basmati as a case study. Journal of Food Science and Technology DOI: 10.1007/s13197-014-1579-0

Archak S, Nagaraju J (2014) Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs). Bioinformation 10:63-67.

Choudhary G, Ranjitkumar N, Surapaneni M, Deborah DA, Vipparla A, Anuradha G, Siddiq EA, Vemireddy LR (2013) Molecular genetic diversity of major Indian rice cultivars over decadal periods. PLoS One 8:e6619.

Siddiq EA, Vemireddy LR and Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agricultural Research 1: 25-36.

Sinha DK, Nagaraju J, Tomar A, Bentur JS and Nair S (2012) Pyrosequencing-based transcriptome analysis of the Asian Rice Gall Midge reveals differential response during compatible and incompatible interaction. International Journal of Molecular Science 13:13079-13103.

Archak S, Nagaraju J (2007) Computational prediction of rice (Oryza sativa) miRNA targets. Genomics, Proteomics and Bioinformatics 5: 196-206.

Lakshminarayanareddy V, Archak S, Nagaraju J (2007) Capillary electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa). Journal of Agriculture and Food Chemistry 55: 8112-8117.

Archak S, Lakshminarayanareddy V, Nagaraju J (2007) High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa). Electrophoresis 28: 2396-2405.

Nagaraju J, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proceedings of the National Academy of Sciences USA 99: 5836-5841.

Patents taken/applied

J. Nagaraju . An Indian patent has also been filed with PCT for DNA markers, which distinguish traditional Basmati, evolved Basmati and non-Basmati rice varieties. (Patent No 260/MAS/2002, dated April 8, 2002)

J. Nagaraju . The US patent has been applied for multiplex Simple Sequence Repeat kit containing 10 loci which can simultaneously distinguish traditional Basmati, evolved Basmati and non-Basmati varieties and quantify the adulterants (File No.FPO2559/RB/SM dated 19.04.2006)

J. Nagaraju. High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Indian Patent No.260/MAS/2002 and 662/CHE/2006; USA Patent No.USPTO 10/357, 488 and 11/406, 257; International Patent No.PCT/IN06/00254)

Related Publications

Masouleh AK, Waters DLE, Reinke RF and Henry RJ (2009) A high-throughput assay for rapid and simultaneous analysis of perfect markers for important quality and agronomic traits in rice using multiplexed MALDI-TOF mass spectrometry. Plant Biotechnology Journal 7:355-363

Aggarwal RK, Shenoy VV Ramadevi J, Rajkumar R and Singh L (2002) Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP.Theor Appl Genet 105:680-690.

Bligh HFJ (2000) Detection of adulteration of Basmati rice with non-premium long-grain rice. International Journal of Food Science & Technology 35: 257-265.

Choudhury PR, Kohli S, Srinivasan K, Mohapatra T and Sharma RP (2001). Identification and classification of aromatic rices based on DNA Fingerprinting. Euphytica 118:243-251.

Colyer A, Macarthur R, Lloyd J and Hird H (2008). Comparison of calibration methods for the quantification of Basmati and non-Basmati rice using microsatellite analysis. Food Additives and Contaminants 1-6.

Garris AJ, Tai TH, Coburn J, Kresovich S and McCouch S (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169: 1631.1638.

Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. TAG Theoretical and Applied Genetics 74:21-30.

Jain S, Jain RK and McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labelled microsatellite markers. Theor Appl Genet 109: 965-977.

Kelly S, Baxter M, Chapman S, Rhodes C, Dennis J and Brereton P (2002) The application of isotopic and elemental analysis to determine the geographical origin of premium long grain rice. Eur Food Res Technol 214:72-78.

Kelly S, Heaton K and Hoogewerff J (2005) Tracing the geographical origin of food: The application of multi-element and multi-isotope analysis Trends in Food Science & Technology 16:555-567.

Lapitan VC, Brar DS, Abe T and Redona ED (2007). Assessment of genetic diversity of Philippine rice cultivars carrying good quality traits using SSR markers. Breeding Science 57:263-270.

Lopez SJ (2008). TaqMan based real time PCR method for quantitative detection of basmati rice adulteration with non-basmati rice. Eur Food Res Technol 227:619-622.

Siwach P, Jain S, Saini N, Chowdhury VK and Jain RK (2004). Allelic diversity among Basmati and Non-Basmati long-grain indica rice varieties using microsatellite markers. J. Plant Biochemistry & Biotechnology 13:25-32.

Steele KA, Ogden R, McEwing R, Briggs H, and Gorham J (2008) InDel markers distinguish Basmatis from other fragrant rice varieties. Field Crops Research 105:81-87.

Woolfe M and Primrose S (2004) Food forensics: using DNA technology to combat misdescription and fraud. TRENDS in Biotechnology 22(5):222-226.

Quality Standardization of Indian Basmati Rice Exports. (1999) ASIA-PACIFIC BIOTECH NEWS (APBN) 3(18):431.

Last updated on: Tuesday, 5^th January, 2016.