2017

Himabindu, P, and Anupama K* 2017 Decreased expression of stable RNA can alleviate the lethality associated with RNase E deficiency in Escherichia coli. J Bacteriol 199: e00724-16

Verma N, Manna SK.* (2017) AGE potentiates cell death in p53 negative cells via upregulaion of NF-kappaB and impairment of autophagy. Journal of Cellular Physiology 232(12): 3598-3610.

K. Dolasia, M. K. Bisht, G. Pradhan, A. Udgata & S. Mukhopadhyay (2017). TLRs/NLRs: Shaping the landscape of host immunity. International Reviews of Immunology. doi:10.1080/08830185.2017. 1397656.

Ananga Ghosh, Amrita Sengupta, Guru Pavan Kumar Seerapu, Ali Nakhi, E. V. Venkat Shivaji Ramarao, Navneet Bung, Gopalakrishnan Bulusu, Manojit Pal and Devyani Haldar. A novel SIRT1 inhibitor, 4bb induces p53-dependent apoptosis in HCT116 human colon carcinoma cells. (2017) Biochem. Biophys. Res. Commun. 488(3):562.

Aggarwal S, Tandon A, Das Bhowmik A, Jain SJ, Dalal A. Autopsy findings in EPG5-related Vici syndrome with antenatal onset: Additional report of Focal cortical microdysgenesis in a second trimester fetus. American Journal of Medical Genetics Part A 2017 Dec 11. doi: 10.1002/ajmg.a.38575.

Shukla A, Das Bhowmik A, Hebbar M, Rajagopal KV, Girisha KM, Gupta N, Dalal A. Homozygosity for a nonsense variant in AIMP2 is associated with a progressive neurodevelopmental disorder with microcephaly, seizures and spastic quadriparesis. Journal of Human Genetics 2017 Nov 16. doi: 10.1038/s10038-017-0363-1.

Das Bhowmik A, Tallapaka KB, MeghaHarke, Dalal A. Targeted next generation sequencing reveals novel splice site mutations in COL6A3 gene in a patient with congenital muscular dystrophy. Neurology India 2017, (accepted).

Das Bhowmik A, Dalal A. Exome Data Analysis for Clinicians: How & Why (2017). Genetic Clinics 10(2), 5-10.

Tallapaka KB, Ranganath P, Dalal A. Variable Expressivity and Response to Bisphosphonate Therapy in a Family with Osteoporosis Pseudoglioma Syndrome (2017). Indian Pediatrics 54(8), 681-683.

Francis F, Bhat V, Balachander B, Khare C, Bethou A, Dalal A, Ponnala R (2017). Look Up to Diagnose Down! Indian Journal of Pediatrics 84(12), 961-962.

Alber M, Kalscheuer VM, Marco E, Sherr E, Lesca G, Till M, Gradek G, Wiesener A, Korenke C, Mercier S, Becker F, Yamamoto T, Scherer SW, Marshall CR, Walker S, Dutta UR, Dalal AB, Suckow V, Jamali P, Kahrizi K, Najmabadi H, Minassian BA (2017). ARHGEF9 disease: Phenotype clarification and genotype-phenotype correlation. Neurology Genetics 3(3), e148.

Harms FL, Girisha KM, Hardigan AA, Kortüm F, Shukla A, Alawi M, Dalal A, Brady L, Tarnopolsky M, Bird LM, Ceulemans S, Bebin M, Bowling KM, Hiatt SM, Lose EJ, Primiano M, Chung WK, Juusola J, Akdemir ZC, Bainbridge M, Charng WL, Drummond-Borg M, Eldomery MK, El-Hattab AW, Saleh MA, Bézieau S, Cogné B, Isidor B, Küry S, Lupski JR, Myers RM, Cooper GM, Kutsche K. Mutations in EBF3 Disturb Transcriptional Profiles and Cause Intellectual Disability, Ataxia, and Facial Dysmorphism. Am J Hum Genet. 2017 Jan 5;100(1):117-127.

Uttarilli A, Pasumarthi D, Ranganath P, Dalal AB (2017). Functional characterization of arylsulfatase B mutations in Indian patients with Maroteaux-Lamy syndrome (mucopolysaccharidosis type VI). Gene 599, 19-27.

Das Bhowmik A, Gupta N, Dalal A, Kabra M (2016). Whole exome sequencing identifies a homozygous nonsense variation in ALMS1 gene in a patient with syndromic obesity. Obesity Research & Clinical 11(2), 241-246.

Risha Khandelwal, Rashmi Sipani, Sriivatsan Govinda Rajan, Raviranjan Kumar, Rohit Joshi. (2017). Combinatorial action of Grainyhead, Extradenticle and Notch in regulating Hox mediated apoptosis in Drosophila larval CNS. PLoS Genet. 2017 Oct 12;13(10):e1007043.

Raviranjan Kumar, Maheshvari Chotaliya, Sruthakeerthi Vuppala, Ankush Auradkar, Kalyani Palasamudrum, Rohit Joshi. (2015). Role of Homothorax in region specific regulation of Deformed in embryonic neuroblasts. Mech Dev. 2015 Nov;138 Pt 2:190-7.

Javvadi, S., Pandey S.S., Mishra, A., Pradhan, B.B., and Chatterjee S. (2017). Bacterial cyclic β-(1,2)-glucans sequester iron to protect against iron-induced toxicity. EMBO Reports

Pandey S.S, Patnana,P.K, Rai S, Chatterjee S. (2017) Xanthoferrin, the α-hydroxy carboxylate type siderophore of Xanthomonas campestris pv. campestris is required for optimum virulence and growth inside cabbage. Molecular Plant Pathology 18:949-962

Pandey S.S., Singh, P., Samal B., Verma RK., and Chatterjee S. (2017). Xanthoferrin Siderophore Estimation from the Cell-free Culture Supernatant of Different Xanthomonas Strains by HPLC. Bio-protocol 17: DOI:10.21769/BioProtoc.2410

Mitra, P., Ghosh, G., Hafeezunnisa, M. and Sen, R. (2017). Rho protein: mechanism and action. Annual Review of Microbiology, 71, 687-709.

Sarkar A and Nandineni MR.Association of common genetic variants with human skin colour variation in Indian populations. American Journal of Human Biology (2017) Oct 6. doi: 10.1002/ajhb.23068.

Sarkar A, Stoneking M and Nandineni MR. Unraveling the human salivary microbiome diversity in Indian populations. (2017) PLoS ONE 12(9):e0184515.

Rao S and Nandineni MR. Genome and transcriptome analyses of chilli anthracnose fungus Colletotrichum truncatumreveal unique repertoire of pathogenicity genes. (2017) PLoS ONE 12(8):e0183567.

Zafar Ullah Zargar, Mallikharjuna Kimidi and Shweta Tyagi (2017). Dynamic site-specific recruitment of RBP2 by pocket protein p130 modulates H3K4 methylation on E2F-responsive promoters. Nucleic Acids Res. (In press)

Aamir Ali, Sailaja Naga Veeranki, Akash Chinchole and Shweta Tyagi (2017) MLL/WDR5 complex regulates Kif2A localization to ensure chromosome congression and proper spindle assembly during mitosis. Developmental Cell. 41(6) 605-622.

Chakraborty S, Shukla S, Arunkumar KP, Nagaraju J and Gadagkar R (2017) Genetic relatedness does not predict the queen’s successor in the primitively eusocial wasp, Ropalidia marginata. Journal of Genetics (In press).

R Kumar, R Raman, V Kotappali, S Gowrishankar, S Pyne, JR Pollack, M Bashyam. Ca2+/Nuclear Factor of Activated T cells signaling is enriched in early-onset rectal tumors devoid of canonical Wnt activation. J Mol Med, 2018; 96:135-146.

Malla A.B. and Bhandari R. IP6K1 is essential for chromatoid body formation and temporal regulation of TNP2 and PRM2 expression in mouse spermatids. Journal of Cell Science(2017) 130, 2854-2866. (Cover image)

R Kumar and MD Bashyam. Multiple oncogenic roles of nuclear beta catenin. J Biosciences, 2017; 42:695-707.

P.R. Abraham, N. Pathak, G. Pradhan , G. Sumanlatha and S. Mukhopadhyay (2017). The N-terminal domain of Mycobacterium tuberculosis PPE17 (Rv1168c) protein plays a dominant role in inducing antibody responses in active TB patients. PLoS One 26: e0179965.

S. Mukhopadhyay and S. Ghosh (2017). Mycobacterium tuberculosis: what is the role of PPE2 during infection? Future Microbiology 12: 457-460. doi: 10.2217 (Invited Editorial Article).

K.H. Bhat , S. Srivastava , S.K. Kotturu , S. Ghosh and S. Mukhopadhyay (2017). The PPE2 protein of Mycobacterium tuberculosis translocates to host nucleus and inhibits nitric oxide production. Scientific Reports 7:39706.

R. N. Rao, R. Shrivastava, G. Pradhan, P. Singh and S. Mukhopadhyay (2017). Phagosome lysosome Fusion Hijack - An Art of Intracellular Pathogens. Proceedings of the Indian Academy of Science doi: 10.16943/ptinsa/2017/48971

2016

Pathania A, Gupta A, Dubey S, Gopal B, Sardesai AA. (2016) The topology of the L-arginine exporter ArgO conforms to an Nin-Cout configuration in Escherichia coli: Requirement for the cytoplasmic N-terminal domain, functional helical interactions and an aspartate pair for ArgO function. J. Bacteriol.198(23):3186-3199.

Takada, H., Shimada, T., Dey, D, Quyuum, MZ, Nakano, N., I Ishiguro, A., Yoshida, A., Yamamoto, K., Sen, R. and Ishihama, A.(2016) *Differential regulation of rRNA and tRNA transcription from the rRNA-tRNA composite operon in Escherichia coli. Plos one. Dec 22; 11(12):e0163057.

Vishalini, V., Agarawal, S. and Sen, R. (2016). Molecular basis of NusG-mediated regulation of Rho-dependent transcription termination in bacteria. Journal of Biological Chemistry. 291 (43), 22386–22403

Qayyum M. Z., Dey D. and Sen, R. (2016). Transcription elongation factor NusA is a negative regulator of Rho-dependent termination. Journal of Biological Chemistry, 291(15), 8090-8108.

Shinde SR, Maddika S (2016). PTEN modulates EGFR late endocytic trafficking and degradation by dephosphorylating Rab7. Nature Commun., 7:10689.

Raychaudhuri K, Chaudhary N, Gurjar M, D'Souza R, Limzerwala J, Maddika S, Dalal SN (2016). 14-3-3. Gene Loss Leads to Activation of the Epithelial to Mesenchymal Transition Due to the Stabilization of c-Jun Protein. J Biol Chem. 291(31):16068-81.

Joshi K, Shah VJ, Maddika S (2016). GINS complex protein Sld5 recruits SIK1 to activate MCM helicase during DNA replication. Cell Signal., 28(12): 1852-1862.

Das Bhowmik A, Dalal A, Matta D, Kandadai RM, Kannan M, Aggarwal S (2016). Identification of a novel splice site HSPG2 mutation and prenatal diagnosis in Schwartz Jampel Syndrome type 1 using whole exome sequencing. Neuromuscular Disorders 26(11), 809-814.

Hebbar M, Lashkari HP, Bhowmik AD, Trujillano D, Shukla A, Kandaswamy KK, Chakraborti S, Rolfs A, Kamath N, Dalal A, Bielas S, Girisha KM (2016). Homozygous deletion of exons 2 and 3 of NPC2 gene causes Niemann-Pick Disease Type C. American Journal of Medical Genetics Part A 170(9), 2486-9.

Aggarwal S*, Das Bhowmik A*, Ramprasad VL, Murugan S, Dalal A (2016). A splice site mutation in HERC1 leads to syndromic intellectual disability with macrocephaly and facial dysmorphism: Further delineation of the phenotypic spectrum. American Journal of Medical Genetics Part A 170(7):1868-73. * Equally contributed.

Phadke SR, Kar A, Bhowmik AD, Dalal A (2016). Complex Camptosynpolydactyly and Mesoaxial Synostotic Syndactyly with Phalangeal Reduction are allelic disorders. American Journal of Medical Genetics Part A 170(6), 1622-5.

Bhowmik AD, Dalal A, Matta D, Sundaram C, Aggarwal S (2016). Targeted next generation sequencing identifies a novel deletion in LAMA2 gene in a merosin deficient congenital muscular dystrophy patient. Indian Journal of Pediatrics 83(4), 354-355.

Pandey SS, Patnana PK, Lomada SK, Tomar A, and Chatterjee S.(2016). Co-regulation of iron metabolism and virulence associated functions by iron and XibR, a novel iron binding transcription factor, in the plant pathogen Xanthomonas. PLOS Pathogens 12(11): e1006019. doi:10.1371/journal.ppat.1006019

Sharma, V., Purushotham, R. and Kaur, R. (2016) The phosphoinositide 3-kinase regulates retrograde trafficking of the iron permease CgFtr1 and iron homeostasis in Candida glabrata. Journal of Biological Chemistry 291:24715-34.

Chanduri M., Rai A., Malla A.B., Wu M., Fiedler D., Mallik R. and Bhandari R. Inositol hexakisphosphate kinase 1 (IP6K1) activity is required for cytoplasmic dynein-driven transport. Biochemical Journal (2016) 473, 3031-3047.

Jadav R.S., Kumar D., Buwa N., Ganguli S., Thampatty S.R., Balasubramanian N. and Bhandari R. Deletion of inositol hexakisphosphate kinase 1 (IP6K1) reduces cell migration and invasion, conferring protection from aerodigestive tract carcinoma in mice. Cellular Signalling (2016) 28, 1124-1136.

Gujjula, R.,^¶ Veeraiah, S.,^¶ Kumar, K., Thakur, S.S., Mishra, K.,* and Kaur, R.* Identification of components of the SUMOylation machinery in Candida glabrata: role of the deSUMOylation peptidase CgUlp2 in virulence. Journal of Biological Chemistry 291:19573-89. ¶Equal contribution; *Corresponding authors.

Khandelwal, N.K., Kaemmer, P., Förster, T.M., Singh, A., Coste, A.T., Andes, D.R., Hube, B., Sanglard, D., Chauhan, N., Kaur, R., d'Enfert, C., Mondal, A.K. and Prasad R. (2016) Pleiotropic effects of the vacuolar ABC transporter MLT1 of Candida albicans on cell function and virulence. Biochemical Journal 473:1537-52.

S.S Pandey, P. Patnana, R. Rai, S. Chatterjee. (2016). Xanthoferrin, the a-hydroxy carboxylate type siderophore of Xanthomonas campestris pv. campestris is required for optimum virulence and growth inside cabbage. Molecular Plant Pathology (In press)

AK Chaudhary, HV Sankar and MD Bashyam. A novel large deletion that encompasses EDA and the downstream gene AWAT2 causes X-linked hypohidrotic/anhidrotic ectodermal dysplasia. Journal of Dermatological Science, 2016; 84:105-107.

Manjari Kiran and H.A.Nagarajaram (2016) Interaction and Localization Diversities of Global and Local Hubs in Human Protein­‐Protein Interaction Network Molecular Biosystems 12, 2875 - 2882

A. Udgata, R. Qureshi and S. Mukhopadhyay (2016). Transduction of functionally contrasting signals by two mycobacterial PPE proteins downstream of TLR2 receptors. Journal of Immunology 197(5):1776-1787.

Parul Singh, Rameshwaram Nagender Rao, Jala Ram Chandra Reddy, RBN Prasad, Sandeep Kumar Kotturu, Sudip Ghosh & Sangita Mukhopadhyay (2016). PE11, a PE/PPE family proteinof Mycobacterium tuberculosis is involved in cell wall remodeling and virulence. Scientific Reports, 6:21624. doi: 10.1038/srep21624.

P. R. Abraham, A. Udgata, G. S. Latha, and S. Mukhopadhyay (2016). The Mycobacterium tuberculosis PPE protein Rv1168c induces stronger B cell response than Rv0256c in active TB patients. Infection Genetics and Evolution, 40:339-345.

Nazir A and Harinarayanan R (2016). (p)ppGpp and the bacterial cell cycle. J. Biosci. 41: 277-282.

Gajula G, Arunkumar KP, Mita K and Nagaraju J (2016) Role of Bmznf-2, a Bombyx mori CCCH zinc finger gene, in masculinisation and differential splicing of Bmtra-2. Insect Biochemistry and Molecular Biology75:32-44.

Zou WB, Boulling A, Masamune A, Issarapu P, Masson E, Wu H, Sun XT, Hu LH, Zhou DZ, He L, Fichou Y, Nakano E, Hamada S, Kakuta Y, Kume K, Isayama H, Paliwal S, Mani KR, Bhaskar S, Cooper DN, Féc C, Shimosegawa T, Chandak GR, Chen JM, Li ZS, Liao Z. No Association Between CEL-HYB Hybrid Allele and Chronic Pancreatitis in Asian Populations. Gastroenterology. 2016 Mar 3. pii: S0016-5085(16)00292-4. doi: 10.1053/j.gastro.2016.02.071. (COVER PAGE)

[Accompanied by Editorial Commentary, Molven A, Fjeld K and Lowe ME (2016). "Lipase Genetic Variants in Chronic Pancreatitis: When the End Is Wrong, All.s Not Well". Gastroenterology". 150: 1515-18].

Ahmad M, Nongmaithem SS, Krishnaveni GV, Fall CH, Yajnik CS, Chandak GR. Lack of replication of association of THSD7A with obesity. Int J Obes (Lond). 2016 Apr;40(4):725-6. doi: 10.1038/ijo.2016.15. Epub 2016 Feb 23.

Paliwal S, Bhaskar S, Reddy DN, Rao GV, Thomas V, Singh SP, Chandak GR. Association Analysis of PRSS1-PRSS2 and CLDN2-MORC4 Variants in Nonalcoholic Chronic Pancreatitis Using Tropical Calcific Pancreatitis as Model. Pancreas. 2016 Jan 18. [Epub ahead of print]

Sawanth SK, Gopinath G, Sambrani N and Arunkumar KP (2016) The autoregulatory loop: A common mechanism of regulation of key sex determining genes in insects. J. Biosci. 41 283–294

Sharma R, Shimada T, MishraVK, Upreti S, Sardesai AA (2016). Growth inhibition by external potassium of Escherichia coli lacking PtsN (EIIA^Ntr) is caused by potassium limitation mediated by YcgO. J. Bacteriol. (in press).

Ajay K Chaudhary, Katta Girisha and Murali D Bashyam. A novel EDARADD 5’-splice site mutation resulting in activation of two alternate cryptic 5’-splice sites causes autosomal recessive Hypohidrotic Ectodermal Dysplasia. Am J Med Genet-A; 2016; 170:1639-41.

Zaidi AH, Raviprakash N, Mokhamatam RB, Gupta P, Manna SK.* (2016) Profilin potentiates chemotherapeutic agents mediated cell death via suppression of NF-kappa B and upregulation of p53. Apoptosis. 2016 Feb 3. [Epub ahead of print] PMID: 26842845

Zaidi AH, Manna SK.* (2016) Profilin-PTEN interaction suppresses NF-kappa B activation via inhibition of IKK phosphorylation. Biochemical Journal. 2016 Jan 19. pii: BJ20150624. [Epub ahead of print] PMID: 26787927.

Verma N, Manna SK.* (2016) Advanced Glycation End Products (AGE) Potently Induce Autophagy through Activation of RAF Protein Kinase and Nuclear Factor κB (NF-κB). Journal of Biological Chemistry 291: 1461-1491.

Usha R Dutta (2016). The History of Human Cytogenetics in India- A Review. GENE.doi: 10.1016/j.gene.2016.01.052 (In press).

Deshpande R, Parthasarathy L, Dalal A, Khadilkar V, Khadilkar A (2016). Variability in the Manifestations and Evolution of Symptoms in a Patient with H Syndrome. Indian Journal of Pediatrics. 83(1):92-3. doi: 10.1007/s12098-015-1776-5.

2015

E. Ramanjaneya Reddy, Swapna Yellanki, Raghavendra Medishetty, Lahiri Konada, Neeraja P. Alamuru, Devyani Haldar, Kishore V. L. Parsa, Pushkar Kulkarni and Dr. Marina Rajadurai (2015) Red Fluorescent Organic Nanoparticle Bioprobes: A Photostable Cytoplasmic Stain for Long Term In Vitro and In Vivo Visualization. Chem Nano Mat 1 (8), 567–576.

Jakeer Pasha, Bhaskar Kandagatla, Saikat Sen, Guru Pavan Kumar Seerapu, Sushmitha Bujji, Devyani Haldar, Srinivas Nanduri, Srinivas Oruganti (2015) Amberlyst-15 catalyzed Povarov reaction of N-arylidene-1H-indazol- 6-amines and indoles: a greener approach to the synthesis of exo- 1,6,7,7a,12,12a-hexahydroindolo[3,2-c]pyrazolo[3,4-f]quinolines as potential sirtuin inhibitors. Tetrahedron Lett 56: 18, 2289–2292.

Palicharla VR, Maddika S (2015). HACE1 mediated K27 ubiquitin linkage leads to YB-1 protein secretion. Cell Signal. 27(12):2355-62.

Kapoor R, Arora S, Ponia SS, Kumar B, Maddika S, Banerjea AC (2015). The miRNA miR-34a enhances HIV-1 replication by targeting PNUTS/PPP1R10, which negatively regulates HIV-1 transcriptional complex formation. Biochem J. 470(3):293-302.

Srivastava, V.K¶., Suneetha, K.J¶. and Kaur, R. (2015) The mitogen-activated protein kinase CgHog1 is required for iron homeostasis, adherence and virulence in Candida glabrata. FEBS Journal 282: 2142-2166. ¶Equal contribution .

Sahoo BK, Zaidi AH, Gupta P, Mokhamatam RB, Raviprakash N, Mahali SK, Manna SK.^* (2015) A natural xanthone increases catalase activity but decreases NF-kappa B and lipid peroxidation in U-937 and HepG2 cell lines. European Journal of Pharmacology 764: 520-528.

Gupta N, Benjamin M, Kar A, Munjal SD, Sarangi AN, Dalal A, Aggarwal (2015). Identification of Promotor and Exonic Variations, and Functional Characterization of a Splice Site Mutation in Indian Patients with Unconjugated Hyperbilirubinemia. PLoS 10(12):e0145967. doi: 10.1371/journal.pone.0145967.

Aggarwal S, Bahal A, Dalal A (2015). Renal dysfunction in sibs with band like calcification with simplified gyration and polymicrogyria: Report of a new mutation and review of literature. European Journal of Medical Genetics. 59(1):5-10. doi: 10.1016/j.ejmg.2015.11.014.

Girisha KM, Kortüm F, Shah H, Alawi M, Dalal A, Bhavani GS, Kutsche K (2015). A novel multiple joint dislocation syndrome associated with a homozygous nonsense variant in the EXOC6B gene. European Journal of Human Genetics. doi: 10.1038/ejhg.2015.261.

Bhavani GSL, Shah H, Shukla A, Dalal A, Girisha KM.In: Pagon RA, Adam MP, Ardinger HH, Wallace SE, Amemiya A, Bean LJH, Bird TD, Fong CT, Mefford HC, Smith RJH, Stephens K (2015). Progressive Pseudorheumatoid Dysplasia. Editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2016.

Uttarilli A, Ranganath P, Jain SJ, Prasad CK, Sinha A, Verma IC, Phadke SR, Puri RD, Danda S, Muranjan MN, Jevalikar G, Nagarajaram HA, Dalal AB (2015). Novel mutations of the arylsulphatase B (ARSB) gene in Indian patients with mucopolysaccharidosis type VI. Indian J Med Res. 142(4):414-25. doi: 10.4103/0971-5916.169201

Bhavani GS, Shah H, Shukla A, Gupta N, Gowrishankar K, Rao AP, Kabra M, Agarwal M, Ranganath P, Ekbote AV, Phadke SR, Kamath A, Dalal A, Girisha KM (2015). Clinical and mutation profile of multicentric osteolysis nodulosis and arthropathy. American Journal of Medical Genetics A. 170(2):410-7. doi: 10.1002/ajmg.a.37447.

Bhavani GS, Shah H, Dalal AB, Shukla A, Danda S, Aggarwal S, Phadke SR, Gupta N, Kabra M, Gowrishankar K, Gupta A, Bhat M, Puri RD, Bijarnia-Mahay S, Nampoothiri S, Mohanasundaram KM, Rajeswari S, Kulkarni AM, Kulkarni ML, Ranganath P, Ramadevi AR, Hariharan SV, Girisha KM (2015). Novel and recurrent mutations in WISP3 and an atypical phenotype. American Journal of Medical Genetics A. 167A (10):2481-4. doi: 10.1002/ajmg.a.37164.

Gupta A, Uttarilli A, Dalal A, Girisha KM (2015). Hunter syndrome with late age of presentation: clinical description of a case and review of the literature. BMJ Case Rep. pii: bcr2015209305. doi: 10.1136/bcr-2015-209305.

Dalal AB, Ranganath P, Phadke SR, Kabra M, Danda S, Puri RD, Sankar VH, Gupta N, Patil SJ, Mandal K, Tamhankar P, Aggarwal S, Agarwal M (2015). Prenatal diagnosis in India is not limited to sex selection. Genetics in Medicine, 17(1):88. doi: 10.1038/gim.2014.149.

Vimala A, Harinarayanan R (2015). Tansketolase activity modulates glycerol-3-phosphate levels in Escherichia coli. Mol Microbiol. 100:263-77.

Nazir A, Harinarayanan R (2015). Inactivation of cell division protein FtsZ by SulA makes Lon indispensable for the viability of ppGpp0 strain of Escherichia coli. J Bacteriol. 198:688-700.

Lakshminarayana RV, Sabahat Noor, Satyavathi VV, Srividhya A, Kaliappan A, Parimala SRN, Bharathi PM, Deborah DA, Sudhakar Rao KV, Shobharani N, EA Siddiq EA, Javaregowda Nagaraju (2015) Discovery and mapping of genomic regions governing economically important traits of Basmati rice. BMC Plant Biology doi:10.1186/s12870-015-0575-5

Chen Z, Nohata J, Guo H, Li S, Liu J, Guo Y, Yamamoto K, Kadono-Okuda K, Liu C, Arunkumar KP, et al., (2015) A comprehensive analysis of the chorion locus in silkmoth. Scientific Reports 5: 16424

Arunkumar KP and Sambrani N (2015) Book review of the Annual Review of Genetics 2014, Bonnie Bassler et al., (eds) Current Science 109:2137-2139.

Bashyam MD, Kotapalli V, Raman R, Chaudhary A, Yadav B, Gowrishankar S, Uppin S, Kongara R, Sastry, Vamsy M, Patanaik S, Rao Satish, Dsouza Shoba, Desai D, Tester Ashavaid. Evidence for presence of Mismatch Repair gene expression positive Lynch syndrome cases in India. Mol Carcinogenesis, 2015, 54(12):1807-14.

A K Chaudhary, R Mohapatra, H A Nagarajaram, P Ranganath, A Dalal, A Dutta, S Danda, K Girisha, M D Bashyam (2015). The novel missense EDAR p.L397H mutation causes autosomal dominant hypohidrotic ectodermal dysplasia. Journal of european academy of dermatology and venearology, 2017; 31:e17-e20.

Rai, R., Javvadi, S. and Chatterjee, S. (2015) Cell–cell signalling promotes ferric iron uptake inXanthomonas oryzae pv. oryzicola that contribute to its virulence and growth inside rice. Molecular Microbiology. Vol. 96: 708-727.

CR Delma, ST Somasundaram, GP Srinivasan, Md Khursheed, MD Bashyam and N Aravindan. Fucoidan from Turbinaria conoides: A multifaceted 'deliverable' to combat pancreatic cancer progression. Int J Biol Macromol, 2015; 74:447-57.

Kakkar, A., Nizampatnam, N.R., Kondreddy A., Pradhan ,BB., Chatterjee, S. (2015). Xanthomonas campestris cell-cell signalling molecule DSF (diffusible signal factor) elicits innate immunity in plants and is suppressed by the exopolysaccharide xanthan. Journal of Experimental Botany. Vol. 66: 6697-714.

Chakraborty S, Muthulakshmi M, Vardhini D, Jayaprakash P, Nagaraju J and Arunkumar KP (2015) Genetic analysis of Indian tasar silkmoth (Antheraea mylitta) populations. Scientific Reports (In press)

Thota S.G. and Bhandari R. The emerging roles of inositol pyrophosphates in eukaryotic cell physiology. J. Biosci. (2015) 40, 593-605.

Thota S.G., Unnikannan C.P., Thampatty S.R., Manorama R. and Bhandari R. Inositol pyrophosphates regulate RNA polymerase I-mediated rRNA transcription in Saccharomyces cerevisiae. Biochemical Journal (2015) 466, 105-114.

Das Bhowmik A Dalal A (2015). Whole exome sequencing identifies a novel frameshift mutation in GPC3 gene in a patient with overgrowth syndrome. Gene DOI:10.1016/j.gene.2015.08.053 (in press)

Aggarwal S, Mohamed Nurul Jain S, Das Bhowmik A, Tandon A, Dalal A (2015). Molecular studies on parents after autopsy identify recombinant GBA gene in a case of Gaucher Disease with Ichthyosis phenotype. Am J Med Genet Part A DOI: 10.1002/ajmg.a.37251 (in press)

Bhowmik AD, Dalal A, Matta D, Sundaram C, Aggarwal S (2015). Targeted next generation sequencing identifies a novel deletion in LAMA2 gene in a merosin deficient congenital muscular dystrophy patient. Indian J Pediatr DOI: 10.1007/s12098-015-1822-3 (in press)

Das Bhowmik A, Rangaswamiah S, Srinivas G, Dalal A (2015). Molecular genetic analysis of Trinucleotide Repeat Disorders (TRDs) in Indian population and application of repeat primed PCR. Eur J Med Genet 58(3), 160-167

Dalal A, Bhowmik AD, Agarwal D, Phadke SR (2015). Exome sequencing & homozygosity mapping for identification of genetic aetiology for spastic ataxia in a consanguineous family. Indian J Med Res 142(2), 220-224

Chen Z, Nohata J, Guo H, Li S, Liu J, Guo Y, Yamamoto K, Kadono-Okuda K, Liu C, Arunkumar KP, et al., (2015) Construction, Complete Sequence and Annotation of a BAC Contig Covering the Silkworm Chorion Locus. Scientific Data (In press)

A. Ahmed, A. Das and S. Mukhopadhyay (2015). Immunoregulatory functions and expression patterns of PE/PPE family members: Roles in pathogenicity and impact on anti-tuberculosis vaccine and drug design. IUBMB Life 67:414-427.

K. Hussain Bhat and S. Mukhopadhyay (2015). Macrophage takeover and the host-bacilli interplay during tuberculosis. Future Microbiol. 10: 853-872.

Gupta AK, Mita K, Arunkumar KP and Nagaraju J (2015) Molecular architecture of silk fibroin of Indian golden silkmoth, Antheraea assama Scientific Reports 5: 12706.

Radha Rama Devi A**, Ramesh V.A, Nagarajaram H.A, SatishS.P.S, Jayanthi U, Lokesh Lingappa (2015) Spectrum of Mutations in Glutaryl-CoA Dehydrogenase gene in GlutaricAciduria Type I - Study from South India Brain & Development (In Press)

Mishra, S. and Sen, R. (2015). N protein from lambdoid phages transform NusA into an antiterminator by modulating NusA- RNA polymerase flap domain interactions. Nucleic Acids Research. 43(12):5744-58.

Kalyani, B. S., Kunamneni, R., Wal, M., Ranjan, A. and Sen, R. (2015). A NusG paralogue from Mycobacterium tuberculosis, Rv0639, has evolved to interact with ribosomal protein S10 (Rv0700) but not to function as a transcription elongation-termination factor. Microbiology, 161, 67–83.

Abdul Mueed Bidcho, Ashwin Dalal, Rakesh Trivedi, Anju Shukla, Sheela Nampoothiri, VH Sankar, Sumita Danda, Neerja Gupta, Madhulika Kabra, Shrikiran A Hebbar, Ramesh Y Bhat, Divya Matta, Alka V Ekbote, Ratna Dua Puri, Shubha R Phadke, Kalpana Gowrishankar, Shagun Aggarwal , Prajnya Ranganath, Sheetal Sharda, Mahesh Kamate, Chaitanya A Datar, Kamalakshi Bhat, Nutan Kamath, Puthiya Mundyat Gopinath, Ishwar C Verma, HA Nagarajaram, Kapaettu Satyamoorthy, Katta Mohan Girisha (2015) Recurrent and novel GLB1 mutations in India Gene (In Press)

Rachita Halehalli and H.A.Nagarajaram (2015) Molecular principles of human virus protein-protein interactions Bioinformatics 31, 1025-1033

Gowrishankar J (2015) End of the Beginning: Elongation and Termination Features of Alternative Modes of Chromosomal Replication Initiation in Bacteria. PLoS Genet 11(1): e1004909. doi:10.1371/journal.pgen.1004909.

Pathania A, Sardesai AA (2015). Distinct paths for basic acid export in Escherichia coli:YbjE(LysO) meidates export of L-lysine. J. Bacteriol. doi:10.1128/JB.02505-14 (in press).

Dalal AB, Ranganath P, Phadke SR, Kabra M, Danda S, Puri RD, V H S, Gupta N, Patil SJ, Mandal K, Tamhankar P, Aggarwal S, Agarwal M. Prenatal diagnosis in India is not limited to sex selection. Genet Med. 2015 Jan;17(1):88.

Stephen J, Girisha KM, Dalal A, Shukla A, Shah H, Srivastava P, Kornak U, Phadke SR. Mutations in patients with osteogenesis imperfecta from consanguineous Indian families. Eur J Med Genet. 2015 Jan;58(1):21-7.

Das Bhowmik A, Rangaswamaiah S, Srinivas G, Dalal AB. Molecular genetic analysis of trinucleotide repeat disorders (TRDs) in Indian population and application of repeat primed PCR. Eur J Med Genet. 2014 Dec 19.

Aggarwal S, Kar A, Bland P, Kelsell D, Dalal A. Novel ABCA12 mutations in harlequin ichthyosis: A journey from photo diagnosis to prenatal diagnosis. Gene. 2015 Feb 10;556(2):254-6.

Usha R. Dutta, Ingo Hansmann, Dietmar Schlote. Molecular cytogenetic characterization of a familial pericentric inversion 3 associated with short stature.Eur J Med Genet. 2015 Jan 13. pii: S1769-7212(15)00004-X. doi: 10.1016/j.ejmg.2015.01.001. [Epub ahead of print]

Rai, M.N^¶., Sharma, V^¶., Balusu, S. and Kaur, R.^* (2015) An essential role for phosphatidylinositol 3-kinase in the inhibition of phagosomal maturation, intracellular survival and virulence in Candida glabrata. Cellular Microbiology 17: 269-287. ¶Equal contribution.

2014

Chaudhary N, Maddika S (2014). WWP2-WWP1 ubiquitin ligase complex co-ordinated by PPM1G maintains the balance between cellular p73 and .Np73 levels. Mol Cell Biol.; 34(19): 3754-64.

Lakshminarayana RV, Satyavathi VV, EA Siddiq and Nagaraju J (2014) Review of methods for the detection and quantification of adulteration of rice: Basmati as a case study. Journal of Food Science and Technology DOI: 10.1007/s13197-014-1579-0

Archak S, Nagaraju J (2014) Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs). Bioinformation 10:63-67

G. Sreejit, A. Ahmed, N. Parveen, V. Jha, V. L.Valluri, S. Ghosh and S. Mukhopadhyay (2014). The ESAT-6 protein of Mycobacterium tuberculosis interacts with beta-2-microglobulin (.2M) affecting antigen presentation function of macrophage. PLoS Pathogens 10:e1004446.

P. R. Abraham, G. S. Latha, V. L. Valluri and S. Mukhopadhyay (2014). Mycobacterium tuberculosis PPE protein Rv0256c induces strong B cell response in tuberculosis patients. Infection Genetics and Evolution 22:244-249.

Sen, R., Chalissery, J., Qayyum, M.Z., Vishalini, V. Muteeb, G. (2014). Nus factors of Escherichia coli., EcoSal plus, ASM Press, doi:10.1128/ecosalplus.ESP-0008-2013.

Shashni, R., Qayyum, M. Z., Vishalini, V., Dey, D. and Sen, R. (2014). Redundancy of primary RNA-binding functions of the bacterial transcription terminator, Rho. Nucleic Acids Research, 42(15):9677-90.

Phulera S, Akif M, Sardesai AA and Mande SC (2014). Redox Proteins of Mycobacterium tuberculosis. Journal of the Indian Institute of Science 94:127-137

Jorge Pereira, Priscilla Porto-Figueira, Carina Cavaco, Khushman Taunk, Srikanth Rapole, Rahul Dhakne, Hampapathalu Nagarajaram, José Câmara (2014) Breath analysis as a potential and non-invasive frontier in disease diagnosis. Metabolites 2014, 5, 3-55. DOI:10.3390/metabo5010003

Murali D. Bashyam, Ajay K. Chaudhary, Manjari Kiran, Venkat Reddy, Hampapathalu A. Nagarajaram, Ashwin Dalal, Leena Bashyam, Deepti Suri, Anju Gupta, Neerja Gupta, Madhulika Kabra, Ratna Puri, RadhaRamaDevi, Seema Kapoor, Sumita Danda. Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation. Clin Genet,2014; 86:530-538.

RSR Adduri, R Katamoni, R Pandilla, SN Madanaa, AK Paripati, V Kotapalli, MD Bashyam. TP53 Pro72 allele is enriched in oral tongue cancer and frequently mutated in esophageal cancer in India. Plos One, 2014, 9:e114002.

Usha R Dutta. Precision in chromosome identification with leads in Molecular Cytogenetics: An illustrated review. Journal of Pediatric Genetics 3(2014) 1-7. DOI 10.3233/PGE-14083.

Raju SR Adduri, Viswakalyan Kotapalli, Neha A Gupta, Swarnalata Gowrishankar, Mukta Srinivasulu, Mohammed M Ali, Subramanyeshwar Rao, Shantveer G Uppin, Umanath K Nayak, Snehalatha Dhagam, Mohana V Chigurupati and Murali D Bashyam. P53 nuclear stabilization is associated with FHIT loss and younger age of onset in squamous cell carcinoma of oral tongue. BMC Clinical Pathology, 2014, 14:37.

Anupam Sinha and H.A.Nagarajaram (2014) Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants. Proteomics 14, 2242-2248

Borah, S., Raju, S., Srivastava, V.K. and Kaur, R. (2014) A pivotal role for a tail subunit of the RNA polymerase II mediator complex, CgMed2, in azole tolerance and adherence in Candida glabrata. Antimicrobial Agents and Chemotherapy 58: 5976-5986.

Srivastava, V.K., Suneetha, K.J. and Kaur, R. (2014) A systematic analysis reveals an essential role for high-affinity iron uptake system, hemolysin and CFEM domain-containing protein in iron homeostasis and virulence in Candida glabrata. Biochemical Journal 463:103-114..

Shah, A.H., Singh, A., Dhamgaye, S., Chauhan, N., Vandeputte, P., Suneetha, K.J., Kaur R, Mukherjee, P.K., Chandra, J., Ghannoum, M.A., Sanglard, D., Goswami, S.K. and Prasad, R. (2014) Novel role of a family of major facilitator transporters in biofilm development and virulence of Candida albicans. Biochemical Journal 460: 223-235.

Bairwa, G., Rasheed, M., Taigwal, R., Sahoo, R. and Kaur, R. (2014) Glycosylphosphatidylinositol (GPI)-linked aspartyl proteases regulate vacuole homeostasis in Candida glabrata. Biochemical Journal 458: 323-334.

Rai, M.N., Borah, S., Bairwa, G¶., Balusu, S¶., Gorityala, N. and Kaur, R. (2013) Establishment of an in vitro system to study intracellular behavior of Candida glabrata in human THP-1 macrophages. Journal of Visualized Experiments 82: e50625. ¶Equal contribution.

Ratheesh R, Viswakalyan K, Mohana V, Sujit CP, Mukta S and Murali D Bashyam. A positive family history of cancer or lifestyle factors may not explain the high incidence of early-onset CRC in India. Colorectal cancer, 2014; 3:409-416.

Shashni, R., Qayyum, M. Z., Vishalini, V., Dey, D. and Sen, R. (2014). Redundancy of primary RNA-binding functions of the bacterial transcription terminator, Rho. Nucleic Acids Research, in press.

Arunkumar KP (2014) Book review of the Annual Review of Genetics 2013, Bonnie Bassler et al., (eds) Current Science 106: 1755-1757.

Gopinathan KP and Arunkumar KP (2013) Javaregowda Nagaraju (1954-2012). Current Science 104:657.

Abdul Mueed Bidchol, Ashwin Dalal, Hitesh Shah, Suryanarayana S, Sheela Nampoothiri, Madhulika Kabra, Neerja Gupta, Sumita Danda, Kalpana Gowrishankar, Shubha R Phadke, Seema Kapoor, Mahesh Kamate, IC Verma, Ratna Dua Puri, VH Sankar, A Radha Rama Devi, SJ Patil, Prajnya Ranganath, S Jamal Md Nurul Jain, Meenal Agarwal, Ankur Singh, Pallavi Mishra, Parag M Tamhankar, Puthiya Mundyat Gopinath, Nagarajaram HA, Kapaettu Satyamoorthy, Katta Mohan Girisha (2014) GALNS Mutations in Indian Patients with Mucopolysaccharidosis IVA Am J Med Genet Part A 164A:2793–2801

Siddaramappa J Patil, Gaurava Kumar Rai, Venkatraman Bhat, Vakkalagadda A Ramesh, H A Nagarajaram, Jyoti Matalia, Shubha R Phadke (2014) Distal Arthrogryposis Type 5D With A Novel ECEL1 Gene Mutation Am J Med Genet Part A DOI: 10.1002/ajmg.a.36702

Pradhan B.B., Chatterjee S. (2014). Reversible non-genetic phenotypic heterogeneity in bacterial quorum sensing. Molecular Microbiology.Vol.92(3),557-569.

Aamir Ali, Sailaja Naga Veeranki and Shweta Tyagi (2014). A SET-domain-independent role of WRAD complex in cell-cycle regulatory function of mixed lineage leukemia. Nucleic Acids Res. May 31 2014 [Epub ahead of print]

Rachita Halehalli and H.A.Nagarajaram (2014) Viral Proteins that Bridge Unconnected Proteins and Components in Human PPI Network. Molecular Biosystems 10, 2448-2458

Murali D. Bashyam, Ajay K. Chaudhary, Manjari Sinha, Hampapathalu A. Nagarajaram, Radha RamaDevi, Prajnya Ranganath, Ashwin Dalal, Leena Bashyam, Neerja Gupta, Madhulika Kabra Mamta Muranjan, Ratna D. Puri, Ishwar C. Verma, Sheela Nampoothiri, Jayarama S. Kadandale. Splice, insertion-deletion and nonsense mutations that perturb the Phenylalanine hydroxylase transcript cause Phenylketonuria in India. J Cell Biochem, 2014, 115:566-574.

Ratheesh Raman, Viswakalyan Kotapalli, Raju Adduri, Swarnalata Gowrishankar, Leena Bashyam, Ajay Chaudhary, Mohana Vamsy, Sujith Patnaik, Mukta Srinivasulu, Regulagadda Sastry, Subramanyeshwar Rao, Anjayneyulu Vasala, NarasimhaRaju Kalidindi, Jonathan Pollack, Sudha Murthy and Murali Bashyam. Evidence for possible non-canonical pathway(s) driven early-onset colorectal cancer in India, Molecular carcinogenesis, 2014; 53:E181.E186.

Anusha Uttarilli, Prajnya Ranganath, S. Jamal Md Nurul Jain1, Krishna Prasad, Anupam Sinha, Ishwar C Verma, Shubha R Phadke, Ratna D Puri, Sumita Danda, Mamta N Muranjan, Ganesh Jevalikar, H A Nagarajaram, Ashwin B Dalal (2014) Novel mutations of the ARSB gene in Indian patients with Mucopolysaccharidosis Type VI Indian J. Med. Res. 142, 414-425

Md Khursheed and Murali D Bashyam. Apico-basal polarity complex and cancer. J Biosciences 2014; 39:145-155.

Dutta UR, Vempally S, Ranganath P, Dalal A A novel combined 15q11.2 duplication and a bisatellited supernumerary marker derived from chromosome 22: Molecular characterization of the marker. Gene. 2014 Feb 5. pii: S0378-1119(14)00137-1. doi: 10.1016/j.gene.2014.02.002. [Epub ahead of print]

Mudunuri, S.B., Patnana, S. and Nagarajaram, H.A. (2014) MICdb3.0: A Comprehensive Resource of Microsatellite Repeats from Prokaryotic Genomes Database, doi:10.1093/database/bau005

R Raman, R Kongara, V Kotapalli, S ­Gowrishankar, RA Sastry, B Nagari & MD ­Bashyam. Pathological stage significantly predicts survival in colorectal cancer patients: a study from two tertiary care centers in India. Colorect. Cancer 3(3), 265–275 (2014).

2013

Rai, M.N., Balusu, S., Gorityala, N., Dandu, L. and Kaur, R. (2012) Functional genomic analysis of Candida glabrata-macrophage interaction: Role of chromatin remodeling in virulence. PLoS Pathogens 8: e1002863.

Zhang J, Zhang P, Wei Y, Piao HL, Wang W, Maddika S, Wang M, Chen D, Sun Y, Hung MC, Chen J, Ma L (2013). Deubiquitylation and stabilization of PTEN by USP13. Nature Cell Biol.; 15(12): 1486-94.

Gangula NR, Maddika S (2013). WD Repeat Protein WDR48 in Complex with Deubiquitinase USP12 Suppresses Akt-dependent Cell Survival Signaling by Stabilizing PHLPP1. J Biol Chem.; 288(48): 34545-54.

Shinde SR, Gangula NR, Kavela S, Pandey V, Maddika S (2013). TOPK and PTEN participate in CHFR mediated mitotic checkpoint. Cell Signal. 25(12):2511-7.

Choudhary G, Ranjitkumar N, Surapaneni M, Deborah DA, Vipparla A, Anuradha G, Siddiq EA, Vemireddy LR (2013) Molecular genetic diversity of major Indian rice cultivars over decadal periods. PLoS One 8:e6619.

K. H. Bhat, A. Das, A. Srikantam and S. Mukhopadhyay (2013) PPE2 protein of Mycobacterium tuberculosis inhibits production of nitric oxide in activated macrophages. Annals of the New York Academy of Sciences 1283:97-101.

N. Parveen, R. Varman, S. Nair, G. Das, S Ghosh and S. Mukhopadhyay (2013). Endocytosis of Mycobacterium tuberculosis heat shock protein 60 is required to induce interleukin-10 production in macrophages. Journal of Biological Chemistry 288:24956-24971.

Sarkar P, Sardesai AA, Murakami KS and Chatterji D (2013). Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit. Journal of Biological Chemistry 288:25076-25087.

Ghosh S., Shukla D., Suman K., Lakshmi B.J., Manorama R., Kumar S. and Bhandari R. Inositol hexakisphosphate kinase 1 maintains hemostasis in mice by regulating platelet polyphosphate levels. Blood (2013) 122, 1478-1486.

Bairwa, G., Sriram, B., and Kaur, R. (2013) Aspartyl proteases in human pathogenic fungi: roles in physiology and virulence. In: The Fungal Cell Wall, Edited by Héctor M. Mora-Montes, Nova Science Publishers. Pages: 159-198.

Kaur, R. (2013) Review of: Annual Review of Microbiology, 2012. Edited by Susan Gottesman, Caroline S. Harwood and Olaf Schneewind. Current Science 105: 390-391.

Mishra, S., Mohan, S., Godavarthi, S. and Sen, R. (2013). The interaction surface of a bacterial transcription elongation factor required for complex formation with an antiterminator during transcription antitermination. Journal of Biological Chemistry, 288 (39), 28089–28103

Ranjan, A., Banerjee, R., Pani, B., Sen, U. and Sen, R. (2013). The moonlighting function of bacteriophage P4 capsid protein, Psu, as a transcription antiterminator. Bacteriophage 3:2, e25657.

Ranjan, A., Banerjee, R., Sharma, S., Sen, U. and Sen, R. (2013). Structural and mechanistic basis of antitermination of Rho-dependent transcription termination by a bacteriophage capsid protein. Nucleic Acids Research, 41 (14):6839-6856.

Murali D Bashyam and Ratheesh Raman. Molecular origins of colon and rectal cancer: not a Wnt-Wnt situation. Current colorectal cancer reports. 2013; 9:365-371.

Bairwa, G., Rasheed, M., Taigwal, R., Sahoo, R. and Kaur, R. (2013) Glycosylphosphatidylinositol (GPI)-linked aspartyl proteases regulate vacuole homeostasis in Candida glabrata. Biochemical J (In press).

Rai, M.N., Borah, S., Bairwa, G^¶., Balusu, S^¶.,Goritala, N. and Kaur, R. (2013) Establishment of an in vitro system to study intracellular behavior of Candida glabrata in human THP-1 macrophages.. J. Vis. Exp. 82: e50625. ^¶Equal contribution.

Sridhar Kavela, Swapnil R. Shinde, Raman Ratheesh, Kotapalli Viswakalyan, Murali Bashyam, Swarnalata Gowrishankar, Mohana Vamsy, Sujith Pattnaik, Subramanyeshwar Rao, Regulagadda Sastry, Mukta Srinivasulu, Junjie Chen, Maddika S Reddy. PNUTS functions as a proto-oncogene by sequestering PTEN. Cancer research. 2013; 73:205-214.

Manjari Kiran and H.A.Nagarajaram (2013) Global versus local hubs in human protein-protein interaction network J.Proteome Res. 12: 5436.5446

Ramaswamy Pandilla, Viswakalyan Kotapalli, Swarnalata Gowrishankar, MohanaVamsy Chigurupati, Sujith Patnaik, Shantveer Uppin, Subramanyeshwar Rao, NarasimhaRaju Kalidindi, Sastry Regulagadda, Challa Sundaram, Mukta Srinivasulu, Anjayneyulu Vasala, and Murali Dharan Bashyam. Distinct genetic aberrations in esophageal adeno and squamous carcinoma. Eur J Clin Invest; 2013; 43 (12): 1233-1239

Nagasowjanya, T., Kranthi Raj, B., Sreethi Reddy, K., and Kasbekar, D. P. (2013) An apparent increase in meiotic silencing strength in crosses involving inbred Neurospora crassa strains. Fungal Genet. Biol. (in press).

Kasbekar, D. P. (2013) Neurospora Duplications, and Genome Defense by RIP and Meiotic Silencing. In : Neurospora: Genomics and Molecular Biology. Edited by D. P. Kasbekar and K. McCluskey Caister Academic Press, Norfolk, UK. Pages 109-127.

Kiran S, Chatterjee N, Singh S, Kaul SC, Wadhwa R, Ramakrishna G. Intracellular distribution of human SIRT7 and mapping of the nucle(ol)ar localization signal. FEBS J. 2013 May 17. doi: 10.1111/febs.12346. [Epub ahead of print]

Md Khursheed, Jayaprakash N Kolla, Viswakalyan Kotapalli, Neha Gupta, Swarnalata Gowrishankar, Shantveer G Uppin, Regulagadda Sastry, Suman Koganti, Challa Sundaram, Jonathan R Pollack, Murali D Bashyam. ARID1B, a member of the human SWI/SNF chromatin remodeling complex, exhibits tumor suppressor activities in pancreatic cancer cell lines. British journal of cancer, 2013; 108:2056-2062.

Usha R Dutta, Vijaya Kumar Pidugu, Ch Venkateshwar Goud, Christiane Hoefers, Monika Hagemann and Ashwin Dalal (2013). Identification and Molecular Cytogenetic Characterization of a novel complex Y chromosome rearrangement in a boy with disorder of sexual development. GENE 519; 374-380.

Beaulieu ED, Ionescu M, Chatterjee S, Yokota K, Trauner D, Lindow S. (2013). Characterization of a Diffusible Signaling Factor (DSF) from Xylella fastidiosa. Mbio. Vol. 4: e00539-12.

Chatterjee S., PandeyA. (2013). Signaling in plant-microbe interactions. Plant stress Vol. 7: 52-59.

Pradhan BB, Ranjan M, Chatterjee S. (2012). XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation and virulence. Molecular Plant-Microbe Interactions . Vol. 25: 1157-1170.

Anupam Sinha and H.A.Nagarajaram (2013) Effect of Alternative Splicing on the Degree Centrality of nodes in PPI networks of Homo sapiens J.Proteome Res. 12:1980-1988

Vishal Acharya and H.A.Nagarajaram (2013) Response to: Statistical Analysis of Missense Mutation Classifiers Human Mutat 34 407

Muley VY, Ranjan A (2013) Evaluation of Physical and Functional Protein-Protein Interaction Prediction Methods for Detecting Biological Pathways PLOS ONE 10.1371/journal.pone.0054325

2012

Siddiq EA, Vemireddy LR and Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agricultural Research 1: 25-36.

Sinha DK, Nagaraju J, Tomar A, Bentur JS and Nair S (2012) Pyrosequencing-based transcriptome analysis of the Asian Rice Gall Midge reveals differential response during compatible and incompatible interaction. International Journal of Molecular Science 13:13079-13103.

K. H. Bhat, A. Ahmed, S. Kumar, P. Sharma and S. Mukhopadhyay (2012). Role of PPE18 protein in intracellular survival and pathogenicity of Mycobacterium tuberculosis in mice. PLoS ONE 7:e52601.

Gowrishankar, J., Krishna Leela, J., and Anupama, K. 2012. R-loops in bacterial transcription: Their causes and consequences. Transcription 4: 153.157.

Krishna Leela, J., Syeda, A.H., Anupama, K., and J. Gowrishankar. 2012. Rho-dependent transcription termination is essential to prevent excessive genome-wide R-loops in Escherichia coli. Proc Natl Acad Sci USA 110: 258-263.

Marbaniang, C.N., and J. Gowrishankar. 2012. Transcriptional Cross-Regulation between Gram-Negative and Gram-Positive Bacteria, Demonstrated Using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum. J Bacteriol. 194: 5657.5666.

Vijaya kumar Pidugu and Usha R Dutta (2012): Fluorescence in .situ Hybridization: Technology and its application in Molecular Medicine. Journal of Cytology and Genetics, 13, 1-8.

Usha R Dutta, Vijaya kumar P, Ashwin B Dalal. (2012): Molecular and Cytogenetic Characterization of Two Patients with Recurrent miscarriages and X-Autosome Translocation. Journal of Research in Medical Sciences 17; 572-4.

Vineeth VS, Suttur S Malini, Sreenivasa G, Usha R Dutta. (2012): High incidence of sperm dysfunction in a varicocele infertile man: case report. Asia Pacific Journal of Reproduction, vol (1), Number 1, March; 61- 64.

Muley VY, Ranjan A (2012) Effect of reference genome selection on the performance of computational methods for genome-wide protein-protein interaction prediction.PLoS One.7(7):e42057.

Ali J, Thummala SR, Ranjan A (2012) The parasite specific substitution matrices improve the annotation of apicomplexan proteins. BMC Genomics.13 Suppl 7:S19.

Rai, M.N., Balusu, S., Goritala, N., Lakshmi, D., and Kaur, R. (2012) Functional genomic analysis of Candida glabrata-macrophage interaction. Role of chromatin remodeling in virulence. PLoS Pathog. 8: e1002863.

Borah, S., Raju, S. and Kaur, R. (2011) The Rho1 GTPase-activating protein CgBem2 is required for survival of azole stress in Candida glabrata. Journal of Biological Chemistry 286: 34311-34324.

Bairwa, G., Balusu, S., and Kaur, R. (2012) Aspartyl proteases in human pathogenic fungi: roles in physiology and virulence in the book entitled "The Fungal Cell Wall", Ed. Héctor M. Mora-Montes, Nova Science Publishers (In press).

Jadav R.S., Chanduri M.V.L., Sengupta S. and Bhandari R. Inositol Pyrophosphate Synthesis by Inositol Hexakisphosphate Kinase 1 is Required for Homologous Recombination Repair J. Biol. Chem. (2012) doi:10.1074/jbc.M112.396556

Banerjee, R., Nath, S., Ranjan, A., Khamrui, K., Pani, B. Sen, R. and Sen , U. (2012). The first structure of Polarity Suppression protein, Psu from Enterobacteria phage P4, reveals a novel fold and a knotted dimer. Journal of Biological Chemistry. 44667-44675.

Muteeb, G., Dey, D., Mishra, S. and Sen, R. (2012). A multi-pronged strategy by an antiterminator to overcome Rho-dependent termination. Nucleic Acids Research, 40(22), 11213-11228.

Shashni, R., Mishra, S., Kalayani, B. S. and Sen. R. (2012). Suppression of in vivo Rho-dependent transcription termination defects: evidence for kinetically controlled steps. Microbiology, 158:1468 - 1481.

Ramakrishna G, Anwar T, Angara RK, Chatterjee N, Kiran S, Singh S. (2012) Role of cellular senescence in hepatic wound healing and carcinogenesis. European Journal of Cell Biology, 91 (10),739-747.

Y. Akhter, M. T. Ehebauer, S. Mukhopadhyay, and S. E. Hasnain (2012). The PE/PPE multigene family codes for virulence factors and is a possible source of mycobacterial antigenic variation: perhaps more? Biochimie. 94: 110-116.

Suresh B. Mudunuri, Priyatosh Mishra, and Nagarajaram, H.A. (2012) In Silico Survey of Distribution and Frequency of Imperfect Microsatellite Repeats in Viral Genomes. Proceedings of IEEE International Conference on Data Science & Engineering (ICDSE 2012), Vol. 1, pp. 31-36 (http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6282303)

Patil SJ, Bhat V, Dalal A, Santosh JS. Confirmation of the Zechi-Ceide syndrome. Am J Med Genet A. 2012;158A(6):1467-71

Angalena R, Aggarwal S, Phadke SR, Dalal A. Compound heterozygote condition in beta thalassemia major due to a novel single nucleotide deletion (-T) at codon 69 in association with IVS 1-5 (G>C) mutation. Int J Lab Hematol. 2012 Mar 12 [Epub ahead of print].

Ponnala R, Ranganath P, Dutta UR, Pidugu VK, Dalal AB. Phenotypic and molecular characterization of partial trisomy 2q resulting from insertion-duplication in chromosome 18q: a case report and review of literature. Cytogenet Genome Res. 2012;136(3):229-34.

Muranjan M, Agarwal S, Lahiri K, Bashyam M. Novel biochemical abnormalities and genotype in farber disease. Indian Pediatr. 2012 Apr 8;49(4):320-2.

Pradhan BB, Ranjan M, Chatterjee S. (2012). XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation and virulence. Molecular Plant-Microbe Interaction .[Pub. ahead of Print. http://dx.doi.org/10.1094/MPMI-02-12-0049-R. posted 05/09/2012]

Murali D Bashyam, Ajay K Chaudhary, Manjari Sinha, H A Nagarajaram, A Radha Rama Devi, Leena Bashyam, E Chandrakanth Reddy, Ashwin Dalal (2012). Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1α and E1β. Journal of Cellular Biochemistry 113:3122-3132

Bhat KH, Chaytanya CK, Parveen N, Varman R, Ghosh S, Mukhopadhyay S. The PPE protein Rv1168c of Mycobacterium tuberculosis augments transcription from HIV-1 LTR promoter.J Biol Chem. 2012 Mar 15. [Epub ahead of print].

M D Bashyam, A K Chaudhary, E C Reddy, V Reddy, V Acharya, H A Nagarajaram, A R R Devi, L Bashyam, A B Dalal, N Gupta, M Kabra, M Agarwal, S R Phadke, R Tainwala, R Kumar, S V Hariharan. A founder ectodysplasin A receptor (EDAR) founder mutation results in a high frequency of the autosomal recessive form of Hypohidrotic Ectodermal Dysplasia in India. Br J Dermatol.2012; 166:819-829.

Murali Dharan Bashyam, Ajay K Chaudhary, Vijay Bhat. The IVS2+837T>G appears to be a relatively common 'rare' β-GLOBIN gene mutation among β-Thalassemia patients in the South Indian state of Karnataka. Hemoglobin 2012;36(5):497-503.

Ray R, Pradhan BB, Ranjan M, Chatterjee S. (2012). Atypical regulation of virulence associated functions by a Diffusible Signal Factor in Xanthomonas oryzae pv. oryzae. Molecular Plant-Microbe Interaction. Vol.25: 789-801

Pankaj Kumar and H.A.Nagarajaram (2012) A Study on Mutational Dynamics of Simple Sequence Repeats in Relation to Mismatch Repair System in Prokaryotic Genomes J. Mol. Evol. 74 127-139

Suresh B. Mudunuri, Priyatosh Mishra and H.A. Nagarajaram (2012) "Distributional Analysis and Motif Frequencies of Compound Microsatellite Repeats in Viral Genomes.", Proceedings of IEEE International Conference on Computing, Electronics & Electrical Technologies (ICCEET), 2012, vol.1, pp.887-893, 21-22 March 2012.

Vishal Acharya and H.A.Nagarajaram (2012) Hansa: An automated method for discriminating disease and neutral human nsSNPs Hum Mutat 33 332-337

AH Shain, CP Giacomini, K Matsukuma, CA Karikari, MD Bashyam, M Hidalgo, A Maitra, JR Pollack. Convergent structural alterations define SWI/SNF chromatin remodeler as a central tumor suppressive complex in pancreatic cancer. Proc Natl Acad Sci, USA. 2012, 109:E252-E259.

Murali Bashyam, Guroji Purushotham, Ajay K Chaudhary, Madhumohan Rao, Vishal Acharya, Tabrez Mohammad, Hampapatalu Nagarajaram, Vuppaladadhiam Hariram, Calambur Narasimhan. A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Mol Cell Biochem. 2012, 360:373-382.

2011

Borah, S., Shivarathri, R. and Kaur, R. (2011) The Rho1 GTPase-activating protein CgBem2 is required for survival of azole stress in Candida glabrata. Journal of Biological Chemistry 286: 34311-34324.

Chatterjee N, Kiran S, Ram BM, Islam N, Ramasarma T, Ramakrishna G. Diperoxovanadate can substitute for H(2)O(2) at much lower concentration in inducing features of premature cellular senescence in mouse fibroblasts (NIH3T3). Mech Ageing Dev. 2011 May;132(5):230-9

A Radha Rama Devi, Usha R Dutta. (2012): Ring chromosome 20 associated with refractory epilepsy: case report. Asian Journal of Medical Sciences 2(2011) 141-144.

Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, et al. Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania. 2011. American Journal of Human Genetics, Vol. 89(4), Oct 7, 516-528.

Ali J, Paila U, Ranjan A(2011) ApicoAlign: an alignment and sequence search tool for apicomplexan proteins. BMC Genomics 12(Suppl 3):S6.

Almeida RP, Killiny N, Newman KL, Chatterjee S, Ionescu M, Lindow S. (2011) Contribution of rpfB to Cell-cell Signal Synthesis, Virulence, and Vector Transmission of Xylella fastidiosa. Molecular Plant Microbe Interaction. Vol. 25: 453-462.

Anupama, K., Krishna Leela, J., and J. Gowrishankar. 2011. Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Mol Microbiol. 82:1330.1348.

Marbaniang, C.N., and J. Gowrishankar. 2011. Role of ArgP (IciA) in lysine-mediated repression in Escherichia coli. J Bacteriol.193: 5985-5996.

Saxena, S., and J. Gowrishankar. 2011a. Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins. J Bacteriol. 193: 3832.3841.

Saxena, S., and J. Gowrishankar. 2011b. Compromised factor-dependent transcription termination in a nusA mutant of Escherichia coli: spectrum of termination efficiencies generated by perturbations of Rho, NusG, NusA, and H-NS family of proteins. J Bacteriol. 193: 3842.3850.

Almeida RP, Killiny N, Newman KL, Chatterjee S, Ionescu M, Lindow S. (2011) Contribution of rpfB to Cell-cell Signal Synthesis, Virulence, and Vector Transmission of Xylella fastidiosa. Molecular Plant Microbe Interaction. 2011 Dec 28. [Epub ahead of print].

Li YR, Zou HS, Che YZ, Cui YP, Guo W, Zou LF, Chatterjee S, Biddle EM, Yang CH, Chen GY. (2011) A novel regulatory role of HrpD6 in regulating hrp-hrc-hpa genes in Xanthomonas oryzae pv. oryzicola. Mol Plant Microbe Interact. 9:1086-101.

Usha R. Dutta , Vijaya Kumar Pidugu, Venkatesh Goud, Ashwin B. Dalal Mosaic Down syndrome with a marker: Molecular cytogenetic characterization of the marker chromosome. Gene. 2011 Dec 28. [Epub ahead of print] PMID:22245181 http://www.ncbi.nlm.nih.gov/pubmed/22245181

Suttur S, Malini, Vijaya Kumar Pidugu, Ashwin B. Dalal, Usha R Dutta. Evaluation of sex chromosomal anomalies in sperms among infertile males by Fluorescence in situ Hybridization. Journal of Cytology & Genetics, vol 12 (NS) 77-84(2011)

Patil SJ, Ponnala R, Shah S, Dalal A. Mosaic Trisomy 9 Presenting with Congenital Heart Disease, Facial Dysmorphism and Pigmentary Skin Lesions: Intricate Issues of Genetic Counseling. Indian J Pediatr. 2011 Oct 6. [Epub ahead of print]

Ponnala R, Dalal A. Partial monosomy 7q. Indian Pediatr. 2011 May 7;48(5):399-401.

Padma Priya T, Dalal AB. Tuberous Sclerosis: Diagnosis and Prenatal Diagnosis by MLPA. Indian J Pediatr. 2011 May 4. [Epub ahead of print]

Kumar R, Panigrahi I, Dalal A, Agarwal S. Sickle Cell Anemia-Molecular Diagnosis and Prenatal Counseling: SGPGI Experience. Indian J Pediatr. 2011 Jun 29. [Epub ahead of print]

Anupam Sinha and H.A.Nagarajaram (2011) Studies on Protein-Protein Interactions: A New Frontier in Computational Biology (key note address) in "Proceedings of 2^nd International Conference on Metacomputing 15-16, Dec. 2011, Goa, India" Editor: Dr. P.K.Roy, Allied Publishers Pvt. Ltd., New Delhi.

Md. Tabrez Shamim and H A Nagarajaram (2011) A Hierarchical Approach to Protein Fold Recognition J. Integr. Bioinform. 8:185-, 2011 (online journal http://journal.imbio.de/index.php?paper_id=185)

Md. Tabrez Shamim and Nagarajaram, H.A. (2011) SVM-Based method for protein structural class prediction using secondary structural content and structural information of amino acids J.Bioinform. Comput. Biol 9: 489-502

Pankaj Kumar, P. S. Chitanya and H A Nagarajaram (2011) PSSRdb: A Relational Database of Polymorphic Simple Sequence Repeats Extracted from Prokaryotic Genomes Nucleic Acid Res. 39(suppl 1): D601-D605

Kwei KA, Shain AH, Bair R, Montgomery K, Karikari CA, van de Rijn M, Hidalgo M, Maitra A, Bashyam MD, Pollack JR. SMURF1 Amplification Promotes Invasiveness in Pancreatic Cancer. PLoS One. 2011;6(8):e23924.

Kalyani, B. S., Muteeb, G., Qayyum, M. Z. and Sen, R. (2011). Interaction with the nascent RNA is a pre-requisite for the recruitment of Rho to the transcription elongation complex in vitro. J. Mol. Biol, 413, 548-560.

Swapna, G., Chakraborty A, Kumari, V., Sen, R. and Nagaraja, V. (2011). Mutations in .' subunit of E.coli RNA polymerase perturb the activator polymerase functional interaction required for promoter clearance. Molecular Microbiology. 80(5):1169-85.

Chalissery, J., Muteeb, G., Nisha C. K., Mohan, S. Jisha, V and Sen, R. (2011). Interaction surface of the transcription terminator Rho required to form a complex with the C-terminal domain of the antiterminator NusG. Journal of Molecular Biology, 405, 49-64.

S. Mukhopadhyay**, S.Nair and S. Ghosh** (2011). Pathogenesis in tuberculosis: transcriptomicapproaches to unraveling virulence mechanisms and finding new drug targets. FEMS Microbiology Reviews (In Press) (**Corresponding Author)

Mahali, S., Raviprakash, N., Manna S.K.* (2011): Advanced glycation end products (AGE) induce apoptosis via a novel pathway: involvement of Ca2+ mediated by interleukin-8. Journal of Biological Chemistry http://www.jbc.org/doi/10.1074/lbc.M111.279190.

Naik, U.S., Gangadharan, C., Abbagani, K., Nagalla, B., Dasari, N., and Manna, S.K.* (2011): A study of nuclear transcription factor kappaB in childhood autism. Plos One 6: e19488.

S. Mukhopadhyay* and K. N. Balaji* (2011). The PE and PPE proteins of Mycobacterium tuberculosis. Tuberculosis (In Press)

A. Das and S. Mukhopadhyay* (2011). The evil axis of obesity, inflammation and type-2 diabetes. Endocrine, Metabolic & Immune Disorders - Drug Targets 11:23-31 (*Corresponding Author)

S. Nair, A. D. Pandey and S. Mukhopadhyay* (2011). The PPE18 protein of Mycobacterium tuberculosis inhibits NF-kB/rel-mediated proinflammatory cytokine production by upregulating and phosphorylating SOCS3 protein. Journal of Immunology 186: 5413-5424 (*Corresponding Author)

Gunnarsdóttir ED, Nandineni MR, et al. Larger mtDNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2011 Mar; 2:228

Usha R Dutta, Rajitha P, Vijaya kumar P, Ashwin B Dalal. (2011): Cytogenetic abnormalities in 1162 couples with recurrent miscarriages in southern region of India: report and review. Journal of Assisted Reproduction and Genetics (2) 28: 145- 148. (http://www.ncbi.nlm.nih.gov/pubmed/20931274)

Angalena R, Prabitha KN, Chaudhary AK, Bashyam MD, Jain S, Dalal AB. A novel homozygous point mutation at codon 82 (HBB:c.247A > T)) in the beta-globin gene leads to thalassemia major. Int J Lab Hematol. 2010 Oct;32(5):548-549 (http://www.ncbi.nlm.nih.gov/pubmed/20136848)

Usha R Dutta, Rajitha P, Vijaya kumar P, Ashwin B Dalal. (2011): Molecular Cytogenetics Illustrated: SKY and FISH Usha R Dutta, Vijaya Kumar Pidugu, Ashwin B Dalal, Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 4, Issue 1 (Jan-Mar 2011).

Järn Rüssel, Usha Dutta, Dorothea Wand, Dietmar Schlote, Ingo Hansmann. (2009): The 9p24.3 breakpoint of a constitutional t(6;9)(p12;p24) presenting in a patient with chronic lymphocytic leukemia maps close to the putative promoter region of DMRT2 gene. Cytogenetic and Genome Research 125:81-86.

Maddika S^@., Kavela S., Rani M., Palicharla VR and Chen J^@. WWP2 is an E3 ubiquitin ligase for PTEN. Nature Cell Biol 2011 (In press) [^@Equal corresponding author].

Narendra P. Singh, Sri R. Madabhusi, Surabhi Srivastava, R. Senthilkumar, C. Neeraja, Sanjeev Khosla,* and Rakesh K. Mishra,* (2011) Epigenetic profile of the euchromatic region of human Y chromosome. Nucleic Acids Research, doi:10.1093/nar/gkq1342 * corresponding authors

Thiagarajan D, Dev RR, Khosla S (2011) The DNA methyltranferase Dnmt2 participates in RNA processing during cellular stress. Epigenetics 6:103-113.

Bairwa, G. and Kaur, R. (2011) A novel role for a glycosylphosphatidylinositol-anchored aspartyl protease, CgYps1, in the regulation of pH homeostasis in Candida glabrata. Mol. Microbiol. 79 (4): 900-913.

Yadav, A.K., Desai, P.R., Rai, M.N., Kaur, R., Ganesan, K. and Bachhawat, A.K. (2011) Glutathione biosynthesis in the yeast pathogens Candida glabrata and Candida albicans: Essential in C. glabrata, and essential for virulence in C. albicans. Microbiology 157: 484-495.

Kole, L., Giri, B., Manna S.K., Pal, B., and Ghosh, S. (2011): Biochanin-A, an isoflavon, showed anti-proliferative and anti-inflammatory activities through the inhibition of iNOS expression, p38-MAPK and ATF-2 phosphorylation and blocking NFκB nuclear translocation. European Journal of Pharmacology. 653: 8-15

Majumdar S., Dutta K., Manna S.K. Basu A., and Bishayi B. (2011): Possible protective role of chloramphenicol in TSST-1 and coagulase positive Staphylococcus aureus induced septic arthritis with altered levels of inflammatory mediators. Inflammation 34: 268-281.

2010

Kaur, R. (2009) Review of: Lilavati’s Daughters: The Women Scientists of India, Edited by Rohini Godbole and Ram Ramaswamy, Indian Academy of Sciences, Bangalore, 2008, 369 pages. Current Science 96: 1137-38.

Subhadeep Chatterjee. 2010. Fatal attraction: bacteria exploit fungal heterokaryon incompatibility to obtain nutrients. Journal of Bioscience. Vol. 35(3): 329-330.

Subhadeep Chatterjee, Killiny S, Almeida RPP and Lindow SE. 2010. Role of Cyclic di-GMP in Xylella fastidiosa Biofilm Formation, Plant Virulence and Insect Transmission. Molecular plant- Microbe Interactions. Vol. 23(10): 1356-1363

Muteeb, G. and Sen, R. (2010). Random mutagenesis using mutator strain. Methods in Molecular Biology, 634, 411-419.

Khamurai, S., Ranjan, A., Pani, B., Sen, R. and Sen, U. (2010) Crystallization and preliminary X-Ray analysis of Psu, an inhibitor of bacterial transcription terminator, Rho. Acta Crystallogr Sect F Struct Biol Cryst Commun. 66(Pt 2), 204-6.

Nisha, C. K., Ranjan, A., Kalyani, S., Wal, M. and Sen, R. (2010). A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function. Journal of Molecular Biology, 395, 966-982.

Dalal AB, Sarkar A, Priya TP and Madhusudan R. Nandineni. Giuffrè-Tsukahara syndrome: Evidence for X-linked dominant inheritance and review. American Journal of Medical Genetics, A. 2010 Aug; 152A (8): 2057-60.

Madhusudan R. Nandineni, S.P.R. Prasad, Ch.V. Goud, D.S. Negi, J. Nagaraju and J. Gowrishankar. DNA-based identification of victims of the Mangalore air crash of May 2010. Current Science (2010), 99 (3): 341-342

Manderwad GP, Gokul G, Kannabiran C, Honavar SG, Khosla S, Vemuganti G (2010) Hypomethylation of the DNMT3L Promoter in Ocular Surface Squamous Neoplasia (OSSN). Archives of Pathology & Laboratory Medicine 134:1193-1196.

Suresh B Mudunuri, Pankaj Kumar, Allam Appa Rao, S Pallamsetty and H A Nagarajaram (2010) G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences Bioinformation 5: 221-223

Dalal AB, Sarkar A, Priya TP, Nandineni MR. Giuffr-Tsukahara syndrome: Evidence for X-linked dominant inheritance and review. Am J Med Genet A. 2010;152A(8):2057-60.(http://www.ncbi.nlm.nih.gov/pubmed/20635354)

Priya TP, Philip N, Molho-Pessach V, Busa T, Dalal A, Zlotogorski A. H syndrome: novel and recurrent mutations in SLC29A3. Br J Dermatol. 2010;162(5):1132-4. (http://www.ncbi.nlm.nih.gov/pubmed/20199539)

Agarwal S, Tamhankar PM, Kumar R, Dalal A. Clinical and haematological features in a compound heterozygote (HBB:c.92 + 5G > C/HBB:c.93-2A > C) case of thalassaemia major. Int J Lab Hematol. 2010;32(3):369-72. (http://onlinelibrary.wiley.com/doi/10.1111/j.1751-553X.2009.01157.x/abstract)

Girisha KM, Vahab SA, Dalal AB, Gopinath PM, Satyamoorthy K. Compound heterozygosity for HbD Punjab and polyadenylation signal mutation causes clinically asymptomatic mild hypochromia and microcytosis. Ann Hematol. 2010;89(6):625-6. (http://www.ncbi.nlm.nih.gov/pubmed/19727721)

Padma Priya T, Ashwin Dalal. Triplet Primed PCR (TP-PCR) A Versatile Method For Molecular Diagnosis Of Triplet Repeat Disorders. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 3, Issue 3 (July-Sept 2010)

Werner J.K. Jr., Speed T. and Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods Mol Biol. (2010) 645, 87-102.

Nirmala Yabaluri* and Murali D Bashyam*. 2010. Hormonal regulation of gluconeogenic gene transcription in the liver. J Biosci 35:473-484 (in press) *shared corresponding authorship.

Bashyam MD, Chaudhary A, Reddy E, RamaDevi A, Savithri G, Ratheesh R, Bashyam L, Mahesh E, Sen D, Puri R, Verma I, Nampoothiri S, Vaidyanathan S, Chandrasekhar M, Kantheti P. 2010. Phenylalanine hydroxylase gene mutations in phenylketonuria patients from India: identification of novel mutations that affect PAH RNA. Mol Genet Metabolism 100:96-99.

Bose S , Sakhuja P, Bezawada L, Agarwal AK, Kazim SN, Khan LA, Sarin SK and Ramakrishna G (2010) Hepatocellular carcinoma with persistent hepatitis B virus infection shows unusual downregulation of Ras expression and differential response to Ras mediated signaling. Journal of Gastroenterologyand Hepatology ( In press)

N. Bashir, F. Kounsar, S. Mukhopadhyay and S. E. Hasnain (2010). Mycobacterium tuberculosis conserved hypothetical protein rRv2626c modulates macrophage effector functions. Immunology 130:34-45.

Manna S.K.*, Bose, J.S., Gangan, V., Raviprakash, N., Navneetha, T., Raghavendra, P.B., Babajan, B., Kumar, C.S., and Jain, S.K. (2010): Novel derivative of benzofuran induces cell death mostly by G2/M cell cycle arrest through p53-dependent pathway but partially by Inhibition of NF-kB. Journal of Biological Chemistry (In press).

Purushotham G, Madhumohan K, Anwaruddin M, Nagarajaram H, Hariram V, Narasimhan C, Bashyam MD. The MYH7 p.R787H mutation causes hypertrophic cardiomyopathy in two unrelated families. Exp Clin Cardiol. 2010 Spring;15(1):e1-4.

K. Alam, S. Ghousunnissa, S, Nair, V. L. Valluri and S. Mukhopadhyay* (2010). Glutathione-redox balance regulates c-rel driven IL-12 production in macrophages: possible implications in anti-tuberculosis immunotherapy. Journal of Immunology, 184:2918-2929.

Manna S.K.*, Babajan, B., Raghavendra, P. B., Raviprakash, N. and Kumar, C. S. (2010): Inhibiting TNF receptor associated factor 2-mediated activation of nuclear factor kappaB facilitates induction of activator protein-1. Journal of Biological Chemistry 285: 11617-11627.

Suresh, B.M, Rao, A.P, Mishra, P. and Nagarajaram, H.A. (2010) . Comparative Analysis of Microsatellite Detecting Software: A Significant Variation in Results and Influence of Parameters, Proceedings of International Symposium on Biocomputing, (ISB 2010), Kerala, February 15-17, 2010. (Link to ACM Digital Library)

2009

Gokul G, Ramakrishna G, and Khosla S (2009) Reprogramming of HeLa cells upon DNMT3L overexpression mimics carcinogenesis. Epigenetics 4: 322-329.

Kumar R, Tamhankar PM, Panigrahi I, Dalal A , Agarwal S. A novel beta-globin mutation (HBB:c.107A>G; or codon 35 beta (A-->G)) at alpha-beta chain interfaces. Ann Hematol. 2009 ;88(12):1269-71. (http://www.ncbi.nlm.nih.gov/pubmed/19488752)

Ashwin Dalal. Stem cell therapy:Current status. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 2, Issue 2 (Apr-Jun 2009)

Sowjanya AP, Paul P, Vedantham H, Ramakrishna G, Vidyadhari D, Vijayaraghavan K, Laksmi S, Sudula M, Ronnett BM, Das M, Shah KV, Gravitt PE; Community Access to Cervical Health Study Group. Suitability of self-collected vaginal samples for cervical cancer screening in periurban villages in Andhra Pradesh, India. Cancer Epidemiol Biomarkers Prev. 2009 May;18(5):1373-8

S. Nair, P. A. Ramaswamy, S. Ghosh, D. C. Joshi, N. Pathak, I. Siddiqui, P. Sharma, S. E. Hasnain, S. C. Mande and S. Mukhopadhyay* (2009) The PPE18 of Mycobacterium tuberculosis interacts with TLR2 and activates IL-10 induction in macro-phage. Journal of Immunology, 183:6269-6281.

Raghavendra, P.B., Pathak N., and Manna S. K.* (2009): Novel role of Thiadiazolidine derivatives in inducing cell death through Myc-Max, Akt, FKHR, and FasL pathway. Biochemical Pharmacology 78: 495-503.

Basu D, Khare G, Singh S, Tyagi A, Khosla S, Mande SC (2009) A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL. Nucleic Acids Res. Jun 15. [Epub ahead of print]

Vinukonda Govindaiah, Shaik Mohammad Naushad, Krishnamurthy Prabhakara Prasad Chintakindi Krishna, Akella Radha Rama Devi. Association of parental hyperhomocysteinemia and C677T Methylenetetrahydrofolate reductase (MTHFR) polymorphism with recurrent pregnancy loss. Clinical Biochemistry 42 (2009) 380.386

Govindaiah Vinukonda , Naushad Shaik Mohammad , Jamal Md Nurul Jain , Krishna Prasad Chintakindi , Radha Rama Devi Akella. Genetic and environmental influences on total plasma homocysteine and coronary artery disease (CAD) risk among South Indians. Clinica Chimica Acta 405 (2009) 127.131

Mohammad, Naushad Shaik; Jain, Jamal Md Nurul; Chintakindi, Krishna Prasad; Singh, Ram Prakash; Naik, Usha; Akella, Radha Rama Devi Aberrations in folate metabolic pathway and altered susceptibility to autism Psychiatric Genetics. 19(4):171-176, August 2009.

Korupolu, R.V., Achary, M.S. , Aneesa, F., Sathish, K., Wasia, R., Sairam, M., Nagarajaram, H.A and Singh, S.S. (2009) Profilin oligomerization and its effect on poly (l-p roline) binding and phosphorylation Int. J.Biol.Macromol. (Accepted)

Suresh B. Mudunuri, Allam Appa Rao, S Pallamsetty, Priyatosh Mishra and H.A.Nagarajaram (2009) VMD: Viral Microsatellite Database - A Comprehensive Resource for All Viral Microsatellites. Journal of Computer Science and Systems Biology. 22: 283-000. doi:10.4172/jcsb.1000043: 001-004

Nonsense -mediated decay: linking a basic cellular process to human disease. Bashyam MD. Expert Rev Mol Diagn. 2009 May;9(4):299-303.

Dalal A, Mehrotra RN (2009). Hypertrichosis, hyperkeratosis and mental retardation syndrome: further delineation of phenotype. Clin Dysmorphol. ;18(2):83-4

Murali D Bashyam, Angalena R, Ajay Chaudhary, Ashwin Dalal. Hemoglobin D (Iran) masquerading as Hemoglobin E: An interesting case report. Newsletter of Genetics Chapter of Indian Academy of Pediatrics, Vol 2, Issue 1 (Jan-Mar 2009)

Senthil Kumar, Aruna Ramachandran, Seyed E Hasnain and Murali D Bashyam (2009). Octamer and heat shock elements regulate transcription from the AcMNPV polyhedrin gene promoter. Arch Virol 154:445-456

Murali D Bashyam. (2009). Studies on nonsense mediated decay reveal novel therapeutic options for genetic diseases. Recent patents on DNA & Gene Sequences 3:7-15

Achary, M.S. and Nagarajaram, H.A. (2009) Effects of Disease Causing Mutations on the Essential Motions in proteins. J. Biomol.Struct.Dyn. 26:609-624

Johny S, Chakraborty S, Gadagkar R and Nagaraju J (2009) Polymorphic microsatellite loci for primitively eusocial wasp Ropalidia marginata. Molecular Ecology Resources 9: 2203-2205.

Arunkumar KP, Mita K and Nagaraju J (2009) Silkworm Z chromosome is enriched in testis-specific genes. Genetics On line March 30: as 10.1534/genetics.108.099994

Pandey RC, Datta D, Mukerjee R, Srinivasan A, Mahalingam S, Sawaya BE. (2009). HIV-1 Vpr: a closer look at the multifunctional protein from the structural perspective. Curr . HIV Res. 7(2) :114-128.

Manna SK and Gangadharan C (2009) Decrease in RelA phosphorylation by inhibiting protein kinase A induces cell death in NF-kappaB-expressing and drug-resistant tumor cells. Molecular Immunology 46: 1340-1350.

Bose JS, Gangan V, Jain SK and Manna SK (2009) Novel caffeic acid ester derivative induces apoptosis by expressing FasL and downregulating NF-kappaB: Potentiation of cell death mediated by chemotherapeutic agents. Journal of Cellular Physiology 218: 653-662.

Bose JS, Gangan V, Jain SK and Manna SK (2009) Downregulation of inflammatory responses by novel caffeine acid ester derivative by inhibiting NF-kappaB. Journal of Clinical Immunology 29: 90-98.

Arunkumar KP, Mita K and Nagaraju J (2009) Silkworm Z chromosome is enriched in testis-specific genes. Genetics On line March 30: as 10.1534/genetics.108.099994

Johny S, Chakraborty S, Gadagkar R and Nagaraju J (2009) Polymorphic microsatellite loci for primitively eusocial wasp Ropalidia marginata. Molecular Ecology Resources 9: 2203-2205.

Pani, B., Ranjan, A. and Sen, R. (2009). Interaction surface of bacteriophage P4 protein Psu required for the complex formation with the transcription terminator Rho. Journal of Molecular Biology. 389. 647-660.

Kumar, S., Balakrishna, K., Agarwal, G. S., Merwyn, S., Rai, G. P., Batra, H. V., Sardesai, A. A., and J. Gowrishankar. 2009. Th1-type immune response to infection by pYV-cured phoP-phoQ null mutant of Yersinia pseudotuberculosis is defective in mouse model. Antonie Van Leeuwenhoek. 95 :91-100

2008

Subhadeep Chatterjee, Rodrigo P. P. Almeida, and Steven Lindow. 2008. Living in two Worlds:The Plant and Insect Lifestyles of Xylella Fastidiosa. Annu. Rev. Phytopathol. Vol. 46:243-71.

Paila U, Kondam R, Ranjan A(2008) Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Res. 36 :6664-6675.

Khan N, Alam K, Mande SC, Valluri VL, Hasnain SE and Mukhopadhyay S (2008). Mycobacterium tuberculosis heat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages. Cellular Microbiology. 10: 1711-1722.

Akif Mohd, Khare G, Tyagi AK, Mande SC and Sardesai AA (2008)Functional studies on multiple thioredoxins from Mycobacterium tuberculosis. J. Bacteriol. 190: 7087- 7095.

Kumar P, Issac B, Dodson EJ, Turkenburg JP and Mande SC (2008) Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein. J. Mol. Biol. 383: 482- 493.

Hegde S, Manimaran P and Mande SC (2008) Dynamic changes in protein functional linkage networks revealed by integration with gene expression data. PLoS Comput. Biol. 4: e1000237.

Naushad SM, Jain Jamal MN, Prasad CK, Rama Devi AR (2008). Relationship between methionine synthase, methionine synthase reductase genetic polymorphisms and deep vein thrombosis among South Indians. Clin Chem Lab Med 46(1):73-79.

K Prabhakara, Damien L Bruno, Priya Padman, Suma Prasad, R Sudheer Kumar, Howard R Slater, A Radha Ramadevi (2008). Prenatal detection of deletion-duplication of chromosome 3 arising from meiotic recombination of familial pericentric inversion. Prenat Diag 28(5):466-8

Kevin A. Kwei*, Murali D. Bashyam*#, Jessica Kao, Raman Ratheesh, Edumakanti C. Reddy, Young H. Kim, Kelli Montgomery, Craig P. Giacomini, Yoon-La Choi, Sreejata Chatterjee, Collins A. Karikari, Keyan Salari, Pei Wang, Tina Hernandez-Boussard, Gowrishankar Swarnalata, Matt van de Rijn, Anirban Maitra, Jonathan R. Pollack. (2008) Genomic profiling identifies GATA6 as a candidate oncogene amplified in pancreatobiliary cancer. PLOS Genet 4:e100081 (*shared first authorship and senior authorship).

Achary, M.S. and Nagarajaram, H.A. (2008) Comparative docking studies of CYP1b1 and its PCG associated mutant forms. Journal of Biosciences. 33:699-713

Srinivasan A, Ayyavoo V, Mahalingam S, Kannan A, Boyd A, Datta D, Kalyanaraman VS, Cristillo A, Collman RG, Morellet N, Sawaya BE, Murali R. (2008) A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: potential impact on CTL epitopes. Virol J. 5:1-17

Arunkumar KP, Kifayathullah L, Nagaraju J (2008) Microsatellite markers for the Indian golden silkmoth, Antheraea assama (Saturniidae: Lepidoptera). Molecular Ecology Resources 9: 268-270.

Mrinal N and Nagaraju J (2008) Intron loss is associated with gain of function in the evolution of the gloverin family of antibacterial genes in Bombyx mori. Journal of Biological Chemistry 283: 23376-23387.

Kanginakudru S, Metta M, Jakati RD, Nagaraju J (2008) Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evolutionary Biology 8:174.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J (2008) WildSilkbase: An EST database of wild silkmoths. BMC Genomics 9: 338.

Singh J and Nagaraju J (2008) In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum). Insect Molecular Biology 17: 427-436.

Komissarova, N., Velikodvorskaya, T., Sen, R. King, R. A., Banik-Maiti, S. and Weisberg, R. A. (2008). Inhibition of a Transcriptional Pause by RNA Anchoring to RNA polymerase. Molecular Cell, 31, 683-694^****.

Dutta, D., Chalissery, J. and Sen, R. (2008). Transcription termination factor Rho prefers catalytically active elongation complex for releasing RNA. Journal of Biological Chemistry, 283(29), 20243-20251.

Bhandari R^***, Juluri KR, Resnick AC and Snyder SH (2008) Gene deletion of inositol hexakisphosphate kinase 1 reveals inositol pyrophosphate regulation of insulin secretion, growth, and spermiogenesis. Proceedings of the National Academy of Sciences of the USA 105: 2349-2353

Draskovic P, Saiardi A, Bhandari R^***, Burton A, Ilc G, Kovacevic M, Snyder SH and Podobnik M (2008) Inositol hexakisphosphate kinase products contain diphosphate and triphosphate groups. Chemistry and Biology 15: 274-286

Ponnusamy S, Alderson NL, Hama H, Bielawski J, Jiang JC, Bhandari R^***, Snyder SH, Jazwinski SM and Ogretmen B (2008) Regulation of telomere length by fatty acid elongase 3 in yeast: Involvement of inositol phosphate metabolism and ku70/80 function. Journal of Biological Chemistry 283: 27514-27524
(***Work done elsewhere)

Khan N, Alam K, Nair S, Valluri VL, Murthy KJR and Mukhopadhyay S. (2008). Strong immune responses to the PPE protein Rv1168c are associated with active tuberculosis disease. Clinical and Vaccine Immunology 15:974-980

Hussain MA, Naveed SA, Sechi LA, Ranjan, Alvi A, Ahmed I, Ranjan A, Mukhopadhyay S, and Ahmed N. (2008). Isocitrate dehydrogenase of Helicobacter pylori potentially induces humoral immune response in subjects with peptic ulcer disease and gastritis. PLoS ONE. 3:e1481.

Tundup, N. Pathak, M. Ramanadham, S. Mukhopadhyay, K. J. Murthy, N. Z. Ehtesham, and S. E. Hasnain (2008). The co-operonic PE25/PPE41 protein complex of Mycobacterium tuberculosis elicits increased humoral and cell mediated immune response. PLoS ONE. 3:e3586.

Sowpati DT, Thiagarajan D, Sharma S, Sultana H, John R, Surani A, Mishra RK, Khosla S. (2008). An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.Mech Dev. 125:963-973.

Paila U, Kondam R and Ranjan A (2008) Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Res., 36: 6664 - 6675.

Rajesh V, Singamsetti VK, Vidya S, Gowrishankar M, Elamaran M, Tripathi J, Radhika NB, Kochar D, Ranjan A, Roy SK, and Das A.(2008) Plasmodium falciparum: genetic polymorphism in apical membrane antigen-1 gene from Indian isolates. Exp. Parasitol. 119:144-151.

Vindal V, Ashwantha Kumar E, and Ranjan A (2008) Identification of operator sites within the upstream region of the putative mce2R gene from mycobacteria. FEBS Lett. 582:1117-1122.

( Subhadeep Work done elsewhere)

Subhadeep Chatterjee ^***, Karyn L. Newman, and Steven E. Lindow. 2008. Cell-cell signaling in Xylella fastidiosa suppresses movement and xylem vessel colonization in grape Molecular Plant-Microbe Interactions.Vol. 21(10): 1309-1315.

Subhadeep Chatterjee^***, Rodrigo P. P. Almeida, and Steven Lindow. 2008. Living in two Worlds:The Plant and Insect Lifestyles of Xylella Fastidiosa. Annu. Rev. Phytopathol. Vol. 46:24371

Subhadeep Chatterjee^***, Christina Wistrom, and Steven E. Lindow. 2008. A cell-cell signaling sensor is required for virulence and insect transmission of Xylella fastidiosa. Proc Natl Acad Sci USA. Vol.105(7), pp2670-2675.

*** (This article was highlighted in the perspective in Science Magazine - Signaling [Science Signaling 1 (21), pe23. [DOI: 10.1126/stke.121pe23])

Karyn L. Newman#, Subhadeep Chatterjee # Kimberly A. Ho, and Steven E. Lindow. 2008. Virulence of Plant Pathogenic Bacteria Attenuated by Degradation of Fatty Acid Cell-to-Cell Signaling Factors Molecular Plant-Microbe Interactions. Vol. 21(3): pp. 326-334.

(# Equal contribution first author)

2007

Archak S, Nagaraju J (2007) Computational prediction of rice (Oryza sativa) miRNA targets. Genomics, Proteomics and Bioinformatics 5: 196-206.

Lakshminarayanareddy V, Archak S, Nagaraju J (2007) Capillary electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa). Journal of Agriculture and Food Chemistry 55: 8112-8117.

Akhtar Y, Ahmed I, Devi SM and Ahmed N (2007). The co-evolved Helicobacter pylori and gastric cancer: Trinity of bacterial virulence, host susceptibility and lifestyle. Infectious Agents and Cancer 2:2.

Archak S, Meduri E, Kumar PS and Nagaraju J (2007) InSatDb: a microsatellite database of fully sequenced insect genomes. Nucleic Acids Research 35:D36-D39.

Khan N, Ghousunnissa S, Jegadeeswaran SM, Thiagarajan D, Hasnain SE and Mukhopadhyay S (2007) Anti-B7-1/B7-2 antibody elicits innate-effector responses in macrophages through NF-kB-dependent pathway. International Immunology 19:477-486.

Meglecz E, Anderson SJ, Bourguet D, Butcher R, Caldas A, Cassel-Lundhagen A, d'Acier AC, Dawson DA, Faure N, Fauvelot C, Franck P, Harper G, Keyghobadi N, Kluetsch C, Muthulakshmi M, Nagaraju J, Patt A, Petenian F, Silvain JF and Wilcock HR (2007) Microsatellite flanking region similarities among different loci within insect species. Insect Molecular Biology 16:175-185.

Naushad SM, Jamal NJ, Angalena R, Prasad CK, and Devi AR (2007) Hyperhomocysteinemia and the compound heterozygous state for methylene tetrahydrofolate reductase are independent risk factors for deep vein thrombosis among South Indians. Blood Coagulation & Fibrinolysis 18:113-117.

Raghavendra PB, Sreenivasan Y, and Manna S, K. (2007): Oleandrin induces apoptosis in human, but not in murine cells: dephosphorylation of Akt, expre ssion of FasL, and alteration of membrane fluidity. Mol Immunol. 44:2292-2302

Sreenu VB, Kumar P, Nagaraju J and Nagarajaram HA (2007) Simple sequence repeats in mycobacterial genomes Journal of Biosciences 32:1-15.

Vidyasagar M, Hasnain SE, Mande SC, Nagarajaram HA, Ranjan A, Acharya MS, Anwaruddin, Arun SK, Gyanrajkumar, Kumar D, Priya S, Ranjan S, Reddi BR, Seshadri J, Sravan Kumar P, Swaminathan S, Umadevi P and Vindal V (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry- academia collaboration) Current Science 92:29-38.

Ahmed N, Majeed AA, Ahmed I, Hussain MA, Alvi A, Devi SM, Rizwan M, Ranjan A, Sechi LA, and Megraud F (2007) genoBASE pylori: A genotype search tool and database of human gastric pathogen Helicobacter pylori. Infection Genetics and Evolution. 7(4):463-8.

Archak S, Reddy VLN and Nagaraju J (2007) High-throughput multiplex microsatellite marker assay for detection and quantification of adulteration in Basmati rice (Oryza sativa). Electrophoresis: 28, 2396-2405

Banerjee S, Nandyala AK, Raviprasad P, Ahmed N and Hasnain SE (2007) Iron dependent Iron binding activity of Mycobacterium tuberculosis aconitase. Journal of Bacteriology. 189(11):4046-52.

M D Bashyam A RadhaRama Devi, C K Reddy and S Ranjan. 2007. Molecular genetic analysis of Hypohidrotic Ectodermal Dysplasia patients from India reveals novel mutations in the EDA and EDAR genes. Br J Dermatol 158:163-167.